View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10376_low_21 (Length: 217)
Name: NF10376_low_21
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 37930093 - 37929892
Alignment:
| Q |
1 |
tcacataagtttctattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttcatatatttcatc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37930093 |
tcacataagtttatattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttcatatatttcatc |
37929994 |
T |
|
| Q |
101 |
agcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggcc--aaaggtactacgaccaattaaaccttcaagttgat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37929993 |
ggcattggcattctcaagcacttgcttgtctctactactcacaatgattctactcccaaggccaaaaaggtactacgaccaattaaaccttcaagttgat |
37929894 |
T |
|
| Q |
199 |
ct |
200 |
Q |
| |
|
|| |
|
|
| T |
37929893 |
ct |
37929892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 37957490 - 37957694
Alignment:
| Q |
1 |
tcacataagtttctattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttcatatatttcatc |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||| || ||||||| | |||| |||||||||||| |
|
|
| T |
37957490 |
tcacataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttactttatatatttcatc |
37957589 |
T |
|
| Q |
101 |
agcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaaggtactacga------ccaattaaaccttcaagt |
194 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||| || ||||||||| |||||||| |
|
|
| T |
37957590 |
agcattgccattcttgagcacttgcttgtctctgttagtcacaatggttctactcccttggccaaagttactatgatgtgttccaattaaatcttcaagt |
37957689 |
T |
|
| Q |
195 |
tgatc |
199 |
Q |
| |
|
||||| |
|
|
| T |
37957690 |
tgatc |
37957694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 44644330 - 44644459
Alignment:
| Q |
25 |
tttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttcatatatttcatcagcattggcattctcaagcacttg |
124 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||| || ||||||| ||||||| | |||||||||||| ||||||| ||| |||||| || || || |
|
|
| T |
44644330 |
tttgtttaaaggcatttaaacagaagagtcgtagagattcatgaaaattcatctccttgacttcatatattccatcagctttgacattcttcagtacctg |
44644429 |
T |
|
| Q |
125 |
cttgtctctactagtcacaatgattctact |
154 |
Q |
| |
|
| ||||||| |||||||||||||||||||| |
|
|
| T |
44644430 |
catgtctctgctagtcacaatgattctact |
44644459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 25721671 - 25721507
Alignment:
| Q |
3 |
acataagtttctattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttcatatatttcatcag |
102 |
Q |
| |
|
||||||| || ||| ||||||||||||||||| ||| |||||| ||||||||||| |||||||||||| ||||||| | ||||| ||||||||||| | |
|
|
| T |
25721671 |
acataagcttttataggatagttttgtttaaaggcatttaaactgaagagttgtactgaatcttgaaaacacatctccttgacttcgtatatttcatctg |
25721572 |
T |
|
| Q |
103 |
cattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaag |
167 |
Q |
| |
|
| ||||||||| |||||| || |||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
25721571 |
aaatggcattcttaagcacatgtttgtctctactagtcataatgattctactaccctggccaaag |
25721507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 19869328 - 19869225
Alignment:
| Q |
51 |
agttgtagagaatcttgaaaatccatctccctaacttcatatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattc |
150 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
19869328 |
agttgtagagaatcttgaaaattcatctcattcacttcatatatttcatcagcatctatattcttaagtacttgcatgtctctactagtcacaatgattc |
19869229 |
T |
|
| Q |
151 |
tact |
154 |
Q |
| |
|
|||| |
|
|
| T |
19869228 |
tact |
19869225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University