View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_low_22 (Length: 205)
Name: NF10376_low_22
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_22 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 5920825 - 5920742
Alignment:
| Q |
122 |
ttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactcct |
205 |
Q |
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| T |
5920825 |
ttgctacaacaggcaagtttggtttcctcatcatctctcccttctacttcaaattccaccaccaaccatatccaagtcactcct |
5920742 |
T |
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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 20325140 - 20325051
Alignment:
| Q |
116 |
gtttccttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgccaccaccaaccatgtccaagtcactcct |
205 |
Q |
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| T |
20325140 |
gtttccttgctgcagcaggctagtttgatttcctcatcatctcctcctcctacttcaaatgctaccaccaatcatgtccaaaccactcct |
20325051 |
T |
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