View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_low_7 (Length: 316)
Name: NF10376_low_7
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 299
Target Start/End: Original strand, 42323826 - 42324097
Alignment:
| Q |
24 |
gacatatttaatcaaagcttcttcacatttccaagtctcgaatcaagttttacgagtttgaagtaattatctttcaatcaagggacctctcaggaaattg |
123 |
Q |
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| T |
42323826 |
gacatatttaatcaaagcttcttcacattgccaagtctcgaatcaagtttcacgagtttgaagtaattatctttcaaccaagggacctctcaggaaattg |
42323925 |
T |
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| Q |
124 |
gcatataaatgtgactttaacacttagattaatataagatgactaattttatatcccactgttttcaatttcttatggttaactttcaatcttactttca |
223 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42323926 |
gcatataattgtgattttaacacttagattaatataagatgactaattttatatcccactgttttcaatttcttatggttaactttcaatcttactttca |
42324025 |
T |
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| Q |
224 |
cattgttactcttccacgtacagttcggttctcctacttgaatcaaatccataatgaaaagcttgaactccattat |
299 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324026 |
cattgttact----cacgtacagttcggttctcctacttgaatcaaatccataatgaaaagcttgaactccattat |
42324097 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 27235812 - 27235862
Alignment:
| Q |
69 |
agttttacgagtttgaagtaattatctttcaatcaagggacctctcaggaa |
119 |
Q |
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||||| ||||| |||||||| ||||||||||| |||| ||||||||||||| |
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| T |
27235812 |
agtttcacgaggttgaagtatttatctttcaaccaagtgacctctcaggaa |
27235862 |
T |
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