View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10376_low_9 (Length: 287)
Name: NF10376_low_9
Description: NF10376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10376_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 37930369 - 37930114
Alignment:
| Q |
16 |
gagcagagaaaccacaagaatccaatgtttgtgctacaacattctccaagtgtcctctatagaaacaagctatgtcaacaaatatatccttttgttcgtc |
115 |
Q |
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| T |
37930369 |
gagcagagaaaccacaagaatccaatgtttgtgctacaacattctccaagtgtcctctatagaaacaagctatgtcaacaaatatatccttttgttcgcc |
37930270 |
T |
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| Q |
116 |
gtcaagttcatcataacttaacttcaacactttgaaagttttaagatcaggaagcttttcgagcttttgcaactcactttcccatgctttctttgttctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37930269 |
gtcaagttcatcataacttaacttcaacactttgaaagttttaagatcaggaagcttttcgagcttttgcaactcactttcccatgctttctttgttctg |
37930170 |
T |
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| Q |
216 |
ccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcataatt |
271 |
Q |
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| T |
37930169 |
ccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcataatt |
37930114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 44644034 - 44644285
Alignment:
| Q |
20 |
agagaaaccacaagaatccaatgtttgtgctacaacattctccaagtgtcctctatagaaacaagctatgtcaacaaatatatccttttgttcgtcgtca |
119 |
Q |
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| T |
44644034 |
agagaaaccacaactatccagtgtttgtaaaacaacattctccaaatgtcctctatagaaacaagctatatcaagaaatatctcattctgttcttcatca |
44644133 |
T |
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| Q |
120 |
agttcatcataacttaacttcaacactttgaaagttttaagatcaggaagcttttcgagcttttgcaactcactttcccatgctttctttgttctgccaa |
219 |
Q |
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| T |
44644134 |
agttctacataactcaatttcagcacttcgaaaatgtcattctcaggaagcttatccagcttttgtaactgactttcccatgcttcctttggtctaccgc |
44644233 |
T |
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| Q |
220 |
gaagcaataatcccaaaactttgagagctaatggaactcctttagcataatt |
271 |
Q |
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| T |
44644234 |
aaagtaaaaaacccaaaactttgagtgctaatggaacccttttggcataatt |
44644285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 37957218 - 37957468
Alignment:
| Q |
20 |
agagaaaccacaagaatccaatgtttgtgctacaacattctccaagtgtcctctatagaaacaagctatgtcaacaaatatatccttttgttcgtcgtca |
119 |
Q |
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||||||||||||| ||||||||||||| ||||| ||||| | | ||||||||| || ||||||||||||| ||||||||||||||| |||| |||| |
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| T |
37957218 |
agagaaaccacaataatccaatgtttgaactacacggttctcaagttctcctctataaaagcaagctatgtcaagaaatatatccttttgctcgttgtca |
37957317 |
T |
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| Q |
120 |
agttcatcataacttaacttcaacactttgaaagttttaagatcaggaagcttttcgagcttttgcaactcactttcccatgctttctttgttctgccaa |
219 |
Q |
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||| |||||||||| ||||| ||| | ||||| ||| | || | ||||||||||||||||||||| | |||||||||||||| || | ||||||| |
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| T |
37957318 |
agtccatcataactcaacttgaacgcactgaaaatttcatcatgggaaagcttttcgagcttttgcaaatgactttcccatgcttcctcttttctgccct |
37957417 |
T |
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| Q |
220 |
gaagcaataatcccaaaactttgagagctaatggaactcctttagcataat |
270 |
Q |
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|||| ||| ||||||||||| || |||| ||||| || |||||||||| |
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| T |
37957418 |
gaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcataat |
37957468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 25721951 - 25721701
Alignment:
| Q |
17 |
agcagagaaaccacaagaatccaatgtttgtgctacaacattctccaagtgtcctctatagaaacaagctatgtcaacaaatatatccttttgttcgtcg |
116 |
Q |
| |
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|||||||||||||||| ||| | |||| |||| ||| ||||| |||| ||||| ||||||| ||||| ||||||| ||| |||| ||| ||| ||| |
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| T |
25721951 |
agcagagaaaccacaactatctagtgttcgtgcaacatcattcaccaaatgtccagtatagaagcaagcgatgtcaagaaacatattcttctgtcggtca |
25721852 |
T |
|
| Q |
117 |
tcaagttcatcataacttaacttcaacactttgaaagttttaagatcaggaagcttttcgagcttttgcaactcactttcccatgctttctttgttctgc |
216 |
Q |
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||||| ||||||||||| ||||||||||| ||||| | |||||||| || || | ||||||||| |||||||||||||| | | ||||||| | |
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| T |
25721851 |
tcaagcgagtcataacttaatttcaacactttaaaagtatcctcatcaggaaactcttgcaacttttgcaattcactttcccatgcatcccttgttctac |
25721752 |
T |
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| Q |
217 |
caagaagcaataatcccaaaactttgagagctaatggaactcctttagcat |
267 |
Q |
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| T |
25721751 |
catgaagcaataaccccaaattcttgagaactagtggaacccttttagcat |
25721701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 19869575 - 19869499
Alignment:
| Q |
66 |
tgtcctctatagaaacaagctatgtcaacaaatatatccttttgttcgtcgtcaagttcatcataacttaacttcaa |
142 |
Q |
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||||| ||| |||| ||||||||||||| |||||||||||| || || || ||||| |||| |||||||| ||||| |
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| T |
19869575 |
tgtcccctacagaagcaagctatgtcaagaaatatatccttctgctcatcatcaagcccatcgtaacttaatttcaa |
19869499 |
T |
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