View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10377_high_1 (Length: 407)
Name: NF10377_high_1
Description: NF10377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10377_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 6264446 - 6264074
Alignment:
| Q |
20 |
gagagcaggagctctagtgtgtatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaag |
119 |
Q |
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| T |
6264446 |
gagagcaggagctctagtgtgtatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaag |
6264347 |
T |
|
| Q |
120 |
atgtaattccattgatacaatctgtatttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6264346 |
atgtaattccattgatacaatctgtatttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaa |
6264247 |
T |
|
| Q |
220 |
gctaccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6264246 |
gctaccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaa |
6264147 |
T |
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| Q |
320 |
gtaattcaaggtatatcactatatcataccttttgcgaaacaaccacttattggattctttgctcgccttcat |
392 |
Q |
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| T |
6264146 |
gtaattcaaggtatatcactatatcataccttttgcgaaacaaccacttattggattctttgctcgccttcat |
6264074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 246
Target Start/End: Complemental strand, 6451938 - 6451734
Alignment:
| Q |
45 |
ttccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggacttaagtctgtttctcaagatgtaattccattgatacaatctgt |
144 |
Q |
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| T |
6451938 |
ttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaagtcattgtcacaagacgttttgcctttgttacaatctgt |
6451839 |
T |
|
| Q |
145 |
a---tttgacacgaacttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttagc |
241 |
Q |
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| T |
6451838 |
aatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagc |
6451739 |
T |
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| Q |
242 |
caaat |
246 |
Q |
| |
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||||| |
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| T |
6451738 |
caaat |
6451734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 6332929 - 6332876
Alignment:
| Q |
44 |
attccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttat |
97 |
Q |
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||||||||||||||| | || ||||||||||| || |||||||||||||||||| |
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| T |
6332929 |
attccaagagatgaatcatttggccacttgaagtcttcagactttcttgtttat |
6332876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 6457864 - 6457761
Alignment:
| Q |
206 |
gaaggaggaattaagctaccaacagatatacttagccaaattagtcctttaccagtgttatcagaaatctttagaactgatggtgaacaattcctcaagt |
305 |
Q |
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||||| || |||||||| || |||||||||||||| ||||||||||| ||||| | | ||||||||| | ||||| ||||||||| ||||||||| |
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| T |
6457864 |
gaaggtgggattaagcttcctacagatatacttagtcaaattagtcccttaccggcccttaaggaaatctttcgcactgacggtgaacaagtcctcaagt |
6457765 |
T |
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| Q |
306 |
ttcc |
309 |
Q |
| |
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|||| |
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| T |
6457764 |
ttcc |
6457761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 333
Target Start/End: Complemental strand, 42694004 - 42693829
Alignment:
| Q |
158 |
ttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttagccaaattagtcctttac |
257 |
Q |
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|||||||| ||||| ||||||||||||||||| || | || | ||||| || ||||||||||| ||||||||| |||||||| | || ||||| |||| |
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| T |
42694004 |
ttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtacttagcaagataagtccgttac |
42693905 |
T |
|
| Q |
258 |
cagtgttatcagaaatctttagaactgatggtgaacaattcctcaagtttcctacacctaaagtaattcaaggtat |
333 |
Q |
| |
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| || | |||||||||| |||| ||||||||||| |||||||||| ||| ||||||||||| |||||||||| |
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| T |
42693904 |
ctgttctcaaagaaatctttcgaaccgatggtgaacagttcctcaagtatccaccacctaaagtacttcaaggtat |
42693829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 42694128 - 42694063
Alignment:
| Q |
37 |
tgtgtatattccaagagatgaagctttcggccacttgaaatcctcagactttcttgtttatggact |
102 |
Q |
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||||||| ||||||||||||||||||| || ||||||||||| ||||| |||||| ||||||||| |
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| T |
42694128 |
tgtgtatcttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggact |
42694063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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