View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10377_low_2 (Length: 256)
Name: NF10377_low_2
Description: NF10377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10377_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 24692457 - 24692680
Alignment:
| Q |
18 |
atattttccttctacaacttacatcatttcaaaacttgatttcttcagaaaactgggacttcatccacattgaactttcgtgtaccatcttggagtcacg |
117 |
Q |
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| T |
24692457 |
atattttccttctacaacttatatcatttcaaaacttgatttctgcagaaaactgggacttcatccacattgaactttcgtgtaccatcttggagtcacg |
24692556 |
T |
|
| Q |
118 |
cagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctgaacctgtctttaattccctagaatgtataatcaccttgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24692557 |
cagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctgaacctgtctttaattccctagaatgtataatcaccttgaaa |
24692656 |
T |
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| Q |
218 |
agaacaagctcttaggccattcat |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
24692657 |
agaacaagctcttaggccattcat |
24692680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 24731970 - 24732145
Alignment:
| Q |
18 |
atattttccttctacaacttacatcatttcaaaacttgatttcttcagaaaactgggacttcatccacattgaactttcgtgtaccatcttggagtcacg |
117 |
Q |
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||||||||||||||| ||||| |||| ||||||||||| | | |||| |||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
24731970 |
atattttccttctactactta--tcatatcaaaacttgaaatgtgcagacaactgggacttcgtcaacattgaactttcgtgtaccatcttggagtcacg |
24732067 |
T |
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| Q |
118 |
cagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctgaacctgtctttaattccct |
195 |
Q |
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| T |
24732068 |
cagatggtgccaaggcgatattgaattctgaaactttatctcttccagctccaggtctgaatctctctttacttccct |
24732145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 24723232 - 24723387
Alignment:
| Q |
40 |
atcatttcaaaacttgatttcttcagaaaactgggacttcatccacattgaactttcgtgtaccatcttggagtcacgcagacggtgccaaggcgatatt |
139 |
Q |
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||||||||||||||||| | | ||| || ||||||||| || ||||||||||||||| ||||||| |||| || ||| | ||||||||||| |||| |
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| T |
24723232 |
atcatttcaaaacttgaaatgtgcaggcaattgggacttcgtcaacattgaactttcgtataccatcatggactcttgcaaatggtgccaaggcactatt |
24723331 |
T |
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| Q |
140 |
gaattctgaagctttatctcttccagctccaggtctgaacctgtctttaattccct |
195 |
Q |
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|||||||||| ||||| |||| ||||||||||||||||| || |||||| |||||| |
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| T |
24723332 |
gaattctgaaactttacctctgccagctccaggtctgaatctatctttatttccct |
24723387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 24764239 - 24764365
Alignment:
| Q |
17 |
aatattttccttctacaacttacatcatttcaaaacttgatttcttcagaaaactgggacttcatccacattgaactttcgtgtaccatcttggagtcac |
116 |
Q |
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||||||||||||| |||||||| |||||||||||||||| | | ||||||||||||||||| || || |||||||| ||| |||||||||||| || | |
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| T |
24764239 |
aatattttccttcgacaactta--tcatttcaaaacttgaaatatgcagaaaactgggacttcgtcaacgttgaacttccgtctaccatcttggactctc |
24764336 |
T |
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| Q |
117 |
gcagacggtgccaaggcgatattgaattc |
145 |
Q |
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|| | ||||||||||||| ||||||||| |
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| T |
24764337 |
gcgggtggtgccaaggcgaaattgaattc |
24764365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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