View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10377_low_3 (Length: 235)
Name: NF10377_low_3
Description: NF10377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10377_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 5620947 - 5620728
Alignment:
| Q |
12 |
catagggtaaagggaacaagtatttcctcaaaaacaaaccttaagatcaagccttaccaattgttccataaaacccacggggaccacaagaaccaacacc |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620947 |
cataaggtaaagggaacaagtatttcctcaaaaacaaaccttaagatcaagccttaccaattgttccataaaacccacggggaccacaagaaccaacacc |
5620848 |
T |
|
| Q |
112 |
atatttctctaaagcagatgaacatgagtcctacaagacaaagtaaa------------gcatcagaacactcccaacaaaaagactttattgatatggg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
5620847 |
atatttctctaaagcagatgaacatgagtcctacaagacaaagtaaatatagagtcactgcatcagaccactcccaacaaaaagactttattgatatggg |
5620748 |
T |
|
| Q |
200 |
atcatttccttacaacttac |
219 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
5620747 |
atcatttccttacaacttac |
5620728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 30635814 - 30635940
Alignment:
| Q |
33 |
atttcctcaaaaacaaaccttaagatcaa-gccttaccaattgttccataaaacccacggggaccacaagaaccaacaccatatttctctaaagcagatg |
131 |
Q |
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|||||||||||||||||| |||| || || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| | |
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| T |
30635814 |
atttcctcaaaaacaaactttaatattaaagccttaccaattgttccataaaatccacgggggccacatgaaccaacaccatatttctctaaagcagaag |
30635913 |
T |
|
| Q |
132 |
aacatgagtcctacaagacaaagtaaa |
158 |
Q |
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|||||||||||||| | |||||||| |
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|
| T |
30635914 |
tgcatgagtcctacaatataaagtaaa |
30635940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 30635969 - 30636009
Alignment:
| Q |
174 |
caacaaaaagactttattgatatgggatcatttccttacaa |
214 |
Q |
| |
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||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
30635969 |
caagaaaaagaatttattgatatgggatcatgtccttacaa |
30636009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 21424614 - 21424740
Alignment:
| Q |
33 |
atttcctcaaaaacaaaccttaagatcaa-gccttaccaattgttccataaaacccacggggaccacaagaaccaacaccatatttctctaaagcagatg |
131 |
Q |
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|||||||||||||||||| |||| || || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| | |
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| T |
21424614 |
atttcctcaaaaacaaactttaatattaaagccttaccaattgttccataaaatccacgggggccacatgaaccaacaccatatttctctaaagcagaag |
21424713 |
T |
|
| Q |
132 |
aacatgagtcctacaagacaaagtaaa |
158 |
Q |
| |
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|||||||||||||| | |||||||| |
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|
| T |
21424714 |
tgcatgagtcctacaatataaagtaaa |
21424740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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