View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_high_1 (Length: 635)
Name: NF10378_high_1
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 87 - 554
Target Start/End: Complemental strand, 25927199 - 25926717
Alignment:
| Q |
87 |
taggggttagtatgattcgtcaaatgagattgttccacatcaacttttattttagat---------------attgtttagatcaattttaactttctcc |
171 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
25927199 |
taggtgttagtatgattcgtcaaatgagattgttccacatcaacttttatttcagatcaattttgatctgagattgtttagatcaattttaactttctcc |
25927100 |
T |
|
| Q |
172 |
tgctcaatcatcttgtgttcctatcttcctcatacggcacatgagagggatgaaaaaccttctccctcaatcttcttgtaatgcaaatttatctttagtt |
271 |
Q |
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| T |
25927099 |
tactcaatcatcttgtgttcctatattcctcctacgacacatgagagggatgaaaaaccttctccctcgatcttcttgtaatgcaaatttatctttagtt |
25927000 |
T |
|
| Q |
272 |
tccaaatgtttttactacatatatagtgtgatgttaatgtaaatgaattatgaaattcagttaaattaataaattttgttgtcaattttaaatcatgttg |
371 |
Q |
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||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25926999 |
tccaaatgtttttactacatatatagtgtgatgctaatatagatgaattatgaaattcagttaaattaataaattttgttgtcaattttaaatcatgttg |
25926900 |
T |
|
| Q |
372 |
tcacatttaacttatgttatctctataaaacaaataaaatctatagaccatacgctttagaccccatattaaatacattttaaattttataatccgaaca |
471 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25926899 |
tcacatttaatttatgttatctttataaaacaaataaaatctatacaccgtacgctttagaccccaaattaaatacattttaaattttataatccgaaca |
25926800 |
T |
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| Q |
472 |
ttataaaatcgctttgtattataaaatgtaaactaggtaaaacgagtaaaacagaaggcgcgtgagaaaagcggttgggcttg |
554 |
Q |
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| T |
25926799 |
acataaaatcgcttcgtattataaaatgtaaactaggtaaaacaagtaaaatagaaggcgtgcgagaaaagcggttgggcttg |
25926717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25927627 - 25927545
Alignment:
| Q |
1 |
acccatgacaacaactcatctcacgaagaattttctttcaaggcctttcgtacaaagggtctacatagaccttaatatcaata |
83 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
25927627 |
acccatgagaacaactcatctcatgaagaattttctttcaaggcctttcatacaaagggtctacagagaccttaatatcaata |
25927545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 567 - 623
Target Start/End: Complemental strand, 25926727 - 25926671
Alignment:
| Q |
567 |
ggttgagcttgggcttgcgagaatcttgattgttctaagaagttccattacattctt |
623 |
Q |
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| T |
25926727 |
ggttgggcttgggcttgcgagaatcttgattgttctaagaagttccattacattctt |
25926671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 5747045 - 5746977
Alignment:
| Q |
296 |
agtgtgatgttaatgtaaatgaattatgaaattcagttaaattaataaattttgttgtcaattttaaat |
364 |
Q |
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| T |
5747045 |
agtgtgatgttaatataaatatattatgaaattgtgttcaattaataaattttgttgtctattttaaat |
5746977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 364
Target Start/End: Complemental strand, 43328299 - 43328270
Alignment:
| Q |
335 |
aattaataaattttgttgtcaattttaaat |
364 |
Q |
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| T |
43328299 |
aattaataaattttgttgtcaattttaaat |
43328270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 52975312 - 52975251
Alignment:
| Q |
308 |
atgtaaatgaattatgaaattcagttaaattaataaattttgttgtcaattttaaatcatgt |
369 |
Q |
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||||||||| ||||||||||| || |||| || |||||||||||||||||||||| |||| |
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| T |
52975312 |
atgtaaatgtattatgaaattgtattcaattgatcaattttgttgtcaattttaaattatgt |
52975251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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