View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_high_2 (Length: 414)
Name: NF10378_high_2
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 126 - 399
Target Start/End: Original strand, 150651 - 150924
Alignment:
| Q |
126 |
acttgagaacaatgttgttgatgaacgtttcaccgcgaccagacgagaaatatttgaagaaggtccataggtttccaataaaaggccatcccatatcacc |
225 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150651 |
acttgtgaacaatgttgttgatgaacgtttcaccgcgaccagacgagaaatatttgaagaaggtccataggtttccaataaaaggccatcccatatcacc |
150750 |
T |
|
| Q |
226 |
gggaggcagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactttgctaacaaaaatgtagcatgtaaacaaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
150751 |
gggaggcagtggatattgtttgtttttaaatttaagatcataataccatccattcaagttcctcataactttgctaacaaaaatgtagcatgtcaacaaa |
150850 |
T |
|
| Q |
326 |
gtggcagcaaacatccaaaaccattgaagttccatttggaatctctttcttctttgtgttgtcttagtgatgat |
399 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150851 |
gtggcagcaaacatccataaccattgaagttccatttggaatctctttcttctttgtgttgtcttagtgatgat |
150924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 126 - 399
Target Start/End: Original strand, 131355 - 131635
Alignment:
| Q |
126 |
acttgagaacaatgttgttgatgaacgtttcaccgcgaccagacgagaaatatttgaagaaggtccataggtttccaataaaaggccatcccatatcacc |
225 |
Q |
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|||||| || |||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| || |||||||| |||||||||||||| ||||| |
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| T |
131355 |
acttgaaaataatgttgttgatgaacatttcaccgcgaccagaatagaaatatttgaagaaggaccaaagatttccaattaaaggccatcccatgtcacc |
131454 |
T |
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| Q |
226 |
gggaggcagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactttgctaacaaaaatgtagcatgtaaacaaa |
325 |
Q |
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| T |
131455 |
aggaggtagtggatattgtttgtttttaaatataagatcataataccatccattcaaattcctcataactttgctaacaaaaatgtaacatgccaacaaa |
131554 |
T |
|
| Q |
326 |
gtggcagcaaacatccaaaaccattgaagttccat-------ttggaatctctttcttctttgtgttgtcttagtgatgat |
399 |
Q |
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| T |
131555 |
gtggcagcaaacatccaaaaccattgaagttccattatattcttggaatctctttcgtctttgtgttgtcttagtgatgat |
131635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 125 - 373
Target Start/End: Complemental strand, 10303303 - 10303054
Alignment:
| Q |
125 |
tacttgagaacaatgttgttgatgaacgtttcaccgcgaccagacgagaaatatttgaagaaggtccataggtttccaataaaaggccatcccatatcac |
224 |
Q |
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||||||||||||||||||| ||||||| ||||| | || ||||| | |||||||||||||||| ||| || ||||||| || ||||||||||| |||| |
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| T |
10303303 |
tacttgagaacaatgttgtcgatgaacatttcagcacgcccagataaaaaatatttgaagaagggccaaagatttccaactaatggccatcccatgtcac |
10303204 |
T |
|
| Q |
225 |
cgggaggcagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactttgctaacaaaaatgtagcatgtaaacaa |
324 |
Q |
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| T |
10303203 |
caggaggcagtgggttttgttggtttttaaatttaagatcataataccattcattcaaattccacataactttgttaacaaaaatgtagcatgcaaataa |
10303104 |
T |
|
| Q |
325 |
agtggcagcaaacatccaaaaccattgaagttccatt-tggaatctcttt |
373 |
Q |
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||||||||| ||||||||| |||||||| ||||||| | |||||||||| |
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| T |
10303103 |
cgtggcagcatacatccaaagccattgaaattccattcttgaatctcttt |
10303054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 892191 - 892149
Alignment:
| Q |
136 |
aatgttgttgatgaacgtttcaccgcgaccagacgagaaatat |
178 |
Q |
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| T |
892191 |
aatgttgttgatgaacgtttcaccgcgaccatacgagaaatat |
892149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 150531 - 150563
Alignment:
| Q |
17 |
agagacatgtaaactggaagcaaagcaaaataa |
49 |
Q |
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| T |
150531 |
agagacatgtaaactggaagcaaagcaaaataa |
150563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 136 - 312
Target Start/End: Original strand, 3961758 - 3961934
Alignment:
| Q |
136 |
aatgttgttgatgaacgtttcaccgcgaccagacgagaaatatttgaagaaggtccataggtttccaataaaaggccatcccatatcaccgggaggcagt |
235 |
Q |
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||||||||||||||| | |||| ||||||||| ||||||||||||||||||| ||| || || ||||| |||||||||||||||||||| ||||| ||| |
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| T |
3961758 |
aatgttgttgatgaatatatcacggcgaccagatgagaaatatttgaagaagggccaaagattaccaattaaaggccatcccatatcaccaggaggtagt |
3961857 |
T |
|
| Q |
236 |
ggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcataactttgctaacaaaaatgta |
312 |
Q |
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||| ||||||||||| ||||||||| |||||||||||| |||||||||||| | |||||||||||| |||||||| |
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| T |
3961858 |
ggaaattgtttgtttctaaatttaatatcataataccactcattcaaattccgaacaactttgctaactaaaatgta |
3961934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 326
Target Start/End: Complemental strand, 37431462 - 37431328
Alignment:
| Q |
192 |
ataggtttccaataaaaggccatcccatatcaccgggaggcagtggatattgtttgtttttaaatttaagatcataataccatccattcaaattcctcat |
291 |
Q |
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||||||| ||||||| ||||||||||||||||| ||||||| || || | ||||||| | ||||| |||| ||| ||||| ||||| || |||||| |
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| T |
37431462 |
ataggttgccaataagtggccatcccatatcacctggaggcaaagggtactctttgtttcttaatttgagatgatagtaccaaccattaaacctcctcaa |
37431363 |
T |
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| Q |
292 |
aactttgctaacaaaaatgtagcatgtaaacaaag |
326 |
Q |
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| T |
37431362 |
aaatttgtttacaaaaacatagcatgcaaacaaag |
37431328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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