View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_high_3 (Length: 409)
Name: NF10378_high_3
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 45342496 - 45342735
Alignment:
| Q |
14 |
cctgtgaatgtgataccatatttcgtgaacaaatatgccaaaagttttaaggtattaggtgaaggcaagatgaattatttctcaatattgtataaatgaa |
113 |
Q |
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| T |
45342496 |
cctgtgaatgtgataccatatttcgtgaacaaatatgtcaaaagttt-aaggtattaggtgaaggcaagatgaattatttctcaatattgtataaatgaa |
45342594 |
T |
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| Q |
114 |
ctacatcacgaatccaacagaacagagcatctttttaattttcaaaataacacttcatcatacgaatacaacactataataatatttctcatcatcgtct |
213 |
Q |
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| T |
45342595 |
ctacatcacgaatcc-----aacagagcatctttttaattttcaaaataacacttcatcatacgaatacaacact---ataatatttgtcatcatcgtct |
45342686 |
T |
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| Q |
214 |
gcaaattcagcaatgtcttctaactccatgcatctcaaatatgcattgggaat |
266 |
Q |
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| T |
45342687 |
gcaaattcagcaatgtcttctaactc----catctcaaatatgcattgggaat |
45342735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 268 - 394
Target Start/End: Original strand, 45342774 - 45342900
Alignment:
| Q |
268 |
caccaagacaggtagaattaatttaatggttaaaggtcccagcatcactttgactgaaaatgtgacaggggcttaacaaacttgcatccaactcgatcaa |
367 |
Q |
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| T |
45342774 |
caccaagacaggtagaattaatttaatggttaaaggtcccagcattactttgactgaaaatgtgacaggggcttaacaaacttgcatccaactcgatcaa |
45342873 |
T |
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| Q |
368 |
attatccacaagtgcaggtagcattgt |
394 |
Q |
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| T |
45342874 |
attatccacaagtgcaggtagcattgt |
45342900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 45346970 - 45347089
Alignment:
| Q |
14 |
cctgtgaatgtgataccatatttcgtgaacaaatatgccaaaagttttaaggtattaggtgaaggcaagatgaattatttctcaatattgtataaatgaa |
113 |
Q |
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| T |
45346970 |
cctgtgaatgtgataccatatttcgtgaacaaatatgtcaaaagttt-aaggtattaggtgaaggcaagatgaattatttctcaatattgtataaatgaa |
45347068 |
T |
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| Q |
114 |
ctacatcacgaatccaacaga |
134 |
Q |
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| T |
45347069 |
ctacatcacgaatccaacaga |
45347089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 394
Target Start/End: Original strand, 48843494 - 48843607
Alignment:
| Q |
280 |
tagaattaatttaatggttaaaggtcccagcatcactttgactgaaaatgtgacaggggcttaacaaacttgcatccaactcgatcaaattatccacaag |
379 |
Q |
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| T |
48843494 |
tagaattaatttattggtcaaatgtcccagcttttctttgactgaaaatttgacaagggcc-aacaaacttacatccaactctatcaacttatccacaag |
48843592 |
T |
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| Q |
380 |
tgcaggtagcattgt |
394 |
Q |
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| T |
48843593 |
tgcaggtagcattgt |
48843607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 45370669 - 45370719
Alignment:
| Q |
192 |
ataatatttctcatcatcgtctgcaaattcagcaatgtcttctaactccat |
242 |
Q |
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| T |
45370669 |
ataacatttctcatcatcatctgcaaattcaacaatgtcttctaactccat |
45370719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 48855852 - 48855813
Alignment:
| Q |
197 |
atttctcatcatcgtctgcaaattcagcaatgtcttctaa |
236 |
Q |
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| T |
48855852 |
atttctcatcatcatctgcaaattcagcaatatcttctaa |
48855813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 48865518 - 48865371
Alignment:
| Q |
33 |
atttcgtgaacaaat-atgccaaaagttttaaggtattaggtgaaggcaagatgaattatttctcaatattgtataaatgaactacatcacgaatccaac |
131 |
Q |
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|||| |||||||||| ||||||||||||| ||| ||||| |||||| || | |||| ||| ||||||||||||||||||||| ||||| |||| |
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| T |
48865518 |
attttgtgaacaaattatgccaaaagttt-aagctattatgtgaagaca---taaattgtttttcaatattgtataaatgaactctatcaca---ccaat |
48865426 |
T |
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| Q |
132 |
agaacagagcatctttttaattttcaaaataacacttcatcatacgaatacaaca |
186 |
Q |
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| T |
48865425 |
tcaatggagcatctttttaatcttggaaataacacttcatcataagaatgcaaca |
48865371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 45349561 - 45349616
Alignment:
| Q |
105 |
ataaatgaactacatcacgaatccaacagaacagagcatctttttaattttcaaaataaca |
165 |
Q |
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| T |
45349561 |
ataaatgaactccatcacgaatcc-----aaaagagcatatttttaattttcaaaataaca |
45349616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 45359040 - 45359095
Alignment:
| Q |
105 |
ataaatgaactacatcacgaatccaacagaacagagcatctttttaattttcaaaataaca |
165 |
Q |
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| T |
45359040 |
ataaatgaactccatcacgaatcc-----aaaagagcatatttttaattttcaaaataaca |
45359095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 394
Target Start/End: Original strand, 35648798 - 35648876
Alignment:
| Q |
315 |
ctttgactgaaaatgtgacaggggcttaacaaacttgcatccaactcgatcaaattatccacaagtgcaggtagcattgt |
394 |
Q |
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| T |
35648798 |
ctttgactgaaaatttgacaagggct-aacaaacttacatccaactctatcaacttatccacaattgcaggtagcattgt |
35648876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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