View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_low_10 (Length: 313)
Name: NF10378_low_10
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_low_10 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 23077643 - 23077344
Alignment:
| Q |
14 |
caaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatag |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
23077643 |
caaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtacatggaagccaaaaagaggctaaaaaaaggtgatag |
23077544 |
T |
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| Q |
114 |
agtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatgggaagattgtatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23077543 |
agtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatgggaagattgtatt |
23077444 |
T |
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| Q |
214 |
gatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctcaatgaagttgaggatgcaaccaactttgaacttcctgaatttc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23077443 |
gatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctcaatgaagttgaggatgaaaccaactttgaacttcctgaatttc |
23077344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 23073038 - 23072739
Alignment:
| Q |
14 |
caaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatag |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23073038 |
caaggatgacactacatcgtttcggtaacacttctgctagtagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatag |
23072939 |
T |
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| Q |
114 |
agtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatgggaagattgtatt |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23072938 |
agtatttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtttgggaagattgtatt |
23072839 |
T |
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| Q |
214 |
gatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctcaatgaagttgaggatgcaaccaactttgaacttcctgaatttc |
313 |
Q |
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||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| | | ||||| ||| ||||||||||||| |
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| T |
23072838 |
gataattatccaccaaagtctttggtcaatcctttcatggagaagtatagttgggtcaatgaagttgaggatcctaacaactatgatcttcctgaatttc |
23072739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 23111299 - 23111598
Alignment:
| Q |
14 |
caaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatag |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23111299 |
caaggatgacactacatcgtttcggtaacacttctgctagtagcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatag |
23111398 |
T |
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| Q |
114 |
agtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatgggaagattgtatt |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23111399 |
agtatttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtttgggaagattgtatt |
23111498 |
T |
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| Q |
214 |
gatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctcaatgaagttgaggatgcaaccaactttgaacttcctgaatttc |
313 |
Q |
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||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| | |||||||||||| |||| |
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| T |
23111499 |
gataattatccacctaagtctttggtcaatcctttcatggagaagtatggttgggtcaatgaagttgaggatccaaacaattatgaacttcctgattttc |
23111598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 41080115 - 41079965
Alignment:
| Q |
34 |
tttggtaacacttctgctggtagtttgtggtatgtgttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttg |
133 |
Q |
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||||||||||| || || ||||||||||||||||||| ||||| |||||||| || |||||| | ||||| ||||| || |||||||| || | |
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| T |
41080115 |
tttggtaacacatcagcaagtagtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttag |
41080016 |
T |
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| Q |
134 |
gtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttg |
184 |
Q |
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||||||| ||||||||||| ||||| | |||||||| |||| |||||||| |
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| T |
41080015 |
gtgctggctttaaatgcaacagttgttattgggaagtaatgagagatgttg |
41079965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 52246151 - 52246233
Alignment:
| Q |
16 |
aggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtacatggaagcaaaaaagaggct |
98 |
Q |
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|||||| |||| ||||||| ||||| |||||||||||| | || |||||||| ||||| || |||||||||||||||||||| |
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| T |
52246151 |
aggatggcacttcatcgttggggtaatacttctgctggtggattatggtatgttttaggttatatggaagcaaaaaagaggct |
52246233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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