View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10378_low_12 (Length: 290)

Name: NF10378_low_12
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10378_low_12
NF10378_low_12
[»] chr8 (2 HSPs)
chr8 (153-286)||(26951428-26951561)
chr8 (219-290)||(21276442-21276513)
[»] chr5 (6 HSPs)
chr5 (153-290)||(30304807-30304944)
chr5 (153-286)||(24275232-24275365)
chr5 (153-286)||(24386848-24386981)
chr5 (157-290)||(24870416-24870549)
chr5 (185-276)||(8703514-8703605)
chr5 (198-243)||(32620630-32620675)
[»] chr2 (3 HSPs)
chr2 (153-290)||(28589940-28590077)
chr2 (157-290)||(41315857-41315990)
chr2 (153-276)||(10977757-10977880)
[»] chr3 (8 HSPs)
chr3 (153-290)||(26730859-26730996)
chr3 (153-290)||(47703723-47703860)
chr3 (153-285)||(1017614-1017746)
chr3 (191-282)||(10346509-10346600)
chr3 (153-252)||(20223176-20223274)
chr3 (232-290)||(4525498-4525556)
chr3 (199-271)||(20916414-20916486)
chr3 (199-271)||(20925376-20925448)
[»] scaffold0010 (2 HSPs)
scaffold0010 (153-290)||(255354-255491)
scaffold0010 (11-152)||(255089-255248)
[»] chr7 (5 HSPs)
chr7 (153-290)||(17852330-17852467)
chr7 (153-286)||(12129481-12129614)
chr7 (153-277)||(9451459-9451583)
chr7 (179-282)||(20492474-20492577)
chr7 (216-276)||(12980730-12980790)
[»] chr4 (8 HSPs)
chr4 (153-290)||(23059329-23059466)
chr4 (153-290)||(16889128-16889264)
chr4 (153-286)||(37856958-37857091)
chr4 (184-282)||(35096902-35097000)
chr4 (177-271)||(46078465-46078557)
chr4 (179-282)||(9633052-9633155)
chr4 (153-276)||(17283510-17283632)
chr4 (198-276)||(6969609-6969687)
[»] chr6 (4 HSPs)
chr6 (157-290)||(11657620-11657753)
chr6 (153-290)||(13104357-13104495)
chr6 (153-290)||(32899889-32900026)
chr6 (153-288)||(27862077-27862203)
[»] chr1 (7 HSPs)
chr1 (153-290)||(27877687-27877824)
chr1 (153-290)||(10395346-10395483)
chr1 (152-277)||(17321874-17321999)
chr1 (157-282)||(12539110-12539235)
chr1 (153-273)||(40609930-40610050)
chr1 (161-282)||(2114350-2114471)
chr1 (179-282)||(3601235-3601338)
[»] scaffold0151 (1 HSPs)
scaffold0151 (153-277)||(21339-21462)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 26951428 - 26951561
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26951428 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaact 26951527  T
Q  253 caacatgagagttctgaaatctatcaactagcag 286  Q
    ||||||||||||||||||||||||||||||||||    
T  26951528 caacatgagagttctgaaatctatcaactagcag 26951561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 21276442 - 21276513
Alignment:
Q  219 tgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||| |||||||    
T  21276442 tgagctatcctatttgcttgcctcttgctgaactcaacatgagagttttgaaatctatctactaacagctgt 21276513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 30304944 - 30304807
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30304944 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaact 30304845  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  30304844 caacatgagagttctgaaaactatcaactagcagctgt 30304807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 24275365 - 24275232
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| || |||||||    
T  24275365 atacatgtaagtacatcatcaatcacatgggggctaggattagatagggatgcctgagctaactcgtgagctaccttatttgcttgccttcgactgaact 24275266  T
Q  253 caacatgagagttctgaaatctatcaactagcag 286  Q
    ||||||||| |||||||||| |||||||||||||    
T  24275265 caacatgagtgttctgaaatttatcaactagcag 24275232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 24386848 - 24386981
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| || |||||||    
T  24386848 atacatgtaagtacatcatcaatcacatgggggctaggattagatagggatgcctgagctaactcgtgagctaccttatttgcttgccttcgactgaact 24386947  T
Q  253 caacatgagagttctgaaatctatcaactagcag 286  Q
    ||||||||| |||||||||| |||||||||||||    
T  24386948 caacatgagtgttctgaaatttatcaactagcag 24386981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 24870549 - 24870416
Alignment:
Q  157 atgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaac 256  Q
    ||||||||| ||||||||| | |||| || |||| ||||| |||||||| |||| ||||||||| |||| |||||||| |||||| | | ||||||||||    
T  24870549 atgtaggtacatcatcaataatatggaggttagggttagacagggctgcttgagctaactcgtgtgctatcctatttgtttgccttctgttgaactcaac 24870450  T
Q  257 atgagagttctgaaatctatcaactagcagctgt 290  Q
     |||||||||||||||||||| ||||||||||||    
T  24870449 ttgagagttctgaaatctatctactagcagctgt 24870416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 8703514 - 8703605
Alignment:
Q  185 gctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctat 276  Q
    ||||| ||||||||||| |||||||  |||| ||| |||||||||||| |||||||||  | ||||| |||||||||||||| |||||||||    
T  8703514 gctagaattagatagggttgcctgatctaacccgtaagctaccctattcgcttgcctcgtgttgaacacaacatgagagttccgaaatctat 8703605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 32620675 - 32620630
Alignment:
Q  198 agggctgcctgagttaactcgtgagctaccctatttgcttgcctcc 243  Q
    ||||| || |||| |||||||||||| |||||||||||||||||||    
T  32620675 agggccgcgtgagctaactcgtgagcaaccctatttgcttgcctcc 32620630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 28589940 - 28590077
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28589940 atacatttaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaact 28590039  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28590040 caacatgagagttctgaaatctatcaactagcagctgt 28590077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 157 - 290
Target Start/End: Original strand, 41315857 - 41315990
Alignment:
Q  157 atgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaac 256  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41315857 atgtaggtatatcatcaatcacatgggggctagtattagatagggttgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaac 41315956  T
Q  257 atgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||||||||||||||||||||||||    
T  41315957 atgagagttctgaaatctatcaactagcagctgt 41315990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 153 - 276
Target Start/End: Complemental strand, 10977880 - 10977757
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||| || ||| || |||||||||||| ||||||||  | ||||||    
T  10977880 atacatgtaggtatatcatcaataatatgggggctaggattagacagggctacctgagctagctcatgggctaccctatttacttgcctcatgttgaact 10977781  T
Q  253 caacatgagagttctgaaatctat 276  Q
    |||||||||||||||| |||||||    
T  10977780 caacatgagagttctggaatctat 10977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 26730859 - 26730996
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  26730859 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgtgctaccctatttgcttgcctccggctgaact 26730958  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  26730959 caacatgagagttctgaaatctatcaactagtagctgt 26730996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 47703723 - 47703860
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||    
T  47703723 atacatgtaggtatatcatcaatcacatgggggctaggattatatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggcataact 47703822  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47703823 caacatgagagttctgaaatctatcaactagcagctgt 47703860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 153 - 285
Target Start/End: Original strand, 1017614 - 1017746
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  1017614 atacatgtaggtacatcatcaatcacatgggggctaggattagatagggctgtctgagctaactcgtgagctaccctatttgcttgcctccggttgaact 1017713  T
Q  253 caacatgagagttctgaaatctatcaactagca 285  Q
    |||||||||||||||||||||||||||||||||    
T  1017714 caacatgagagttctgaaatctatcaactagca 1017746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 10346509 - 10346600
Alignment:
Q  191 attagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaacta 282  Q
    |||| |||||| |||||||| |||||||||||| |||||||| |||||||||| | ||||||| ||||| ||||||||||||||||| ||||    
T  10346509 attatatagggttgcctgagctaactcgtgagcgaccctattcgcttgcctcctgttgaactctacatgcgagttctgaaatctatccacta 10346600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 20223274 - 20223176
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||| ||||||||| ||||||||  |||||||||| |||||| ||| || |||||||||||||| ||||||||||||||| | ||||||||    
T  20223274 atacatgtaggtacatcatcaataacatggggt-taggattagacagggctaccttagctaactcgtgagctatcctatttgcttgccttctgctgaact 20223176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 4525498 - 4525556
Alignment:
Q  232 ttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaactagcagctgt 290  Q
    |||||||||||  |||||||||||||||||||||||||||| |||| |||| |||||||    
T  4525498 ttgcttgcctcttgctgaactcaacatgagagttctgaaatttatctactaacagctgt 4525556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 20916486 - 20916414
Alignment:
Q  199 gggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaa 271  Q
    ||||||| |||| ||||||| |||| |||  ||| ||||||||||   |||||||||||| ||||||||||||    
T  20916486 gggctgcatgagctaactcgggagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaa 20916414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 20925448 - 20925376
Alignment:
Q  199 gggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaa 271  Q
    ||||||| |||| ||||||| |||| |||  ||| ||||||||||   |||||||||||| ||||||||||||    
T  20925448 gggctgcatgagctaactcgggagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaa 20925376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 255354 - 255491
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  255354 atacatgtaggtatatcatcaatcatatgggggctaggattagatagggctgcctgagctaacccgtgagctaccctatttgcttgcctccggctgaact 255453  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    |||||||||| |||||||||||||||||||||||||||    
T  255454 caacatgagaattctgaaatctatcaactagcagctgt 255491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 255089 - 255248
Alignment:
Q  11 cagagaaaaatatacaacatgttgttgttgaaaaggttacagagacaccagtaatttcaaataagtctaatactttattccatatggcctt--------- 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||             
T  255089 cagagaaaaatatacaacatgttgttgttgaaaaggttacagagatactagtaatttcaaataagtctaatactttattccatatggccttgcacaatgt 255188  T
Q  102 ---------gatcgtgcgtggcaatgtgaaagatgaataggttgaagaaaattgcttttc 152  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  255189 gaaagataagatcgtgcgtggcaatgtgaaagatgaataggttgaagaaaattgcttttc 255248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 17852467 - 17852330
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17852467 atacatgtaggtacatcatcaatcacatgggggctaagattagatagggctgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaact 17852368  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    |||||||||| |||||||||||||||||||||||||||    
T  17852367 caacatgagaattctgaaatctatcaactagcagctgt 17852330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 12129614 - 12129481
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  12129614 atacatgtaggtacatcatcaatcacatgggggctaggatcagataaggctacctgagctaactcgtgagctaccctatttgcttgccttcggctgaact 12129515  T
Q  253 caacatgagagttctgaaatctatcaactagcag 286  Q
    |||| ||| |||| ||||||||||||||||||||    
T  12129514 caacgtgaaagttttgaaatctatcaactagcag 12129481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 9451583 - 9451459
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||| | ||||||    
T  9451583 atacatgtaggtacatcatcaataatatgggggctaggattagacagggctgcctgatttaactcgtgagctaccctatttgtttgtctcctgttgaact 9451484  T
Q  253 caacatgagagttctgaaatctatc 277  Q
    | | |||||||||||||||||||||    
T  9451483 cgatatgagagttctgaaatctatc 9451459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 20492577 - 20492474
Alignment:
Q  179 atgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatca 278  Q
    ||||||| ||| ||| |||||||||||||||| ||| |||||||| |||||||| ||||||||||   | ||||| | ||||||||||| |||||||| |    
T  20492577 atgggggttagaattggatagggctgcctgagctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttctaaaatctatta 20492478  T
Q  279 acta 282  Q
    ||||    
T  20492477 acta 20492474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 12980790 - 12980730
Alignment:
Q  216 tcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctat 276  Q
    |||||||| |||| ||| | |||||||| | ||||||| ||||||||||||||||||||||    
T  12980790 tcgtgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttctgaaatctat 12980730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 23059329 - 23059466
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    |||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23059329 atacatgtagatacatcatcaatcacatgggggctaggattagataggactgcctgagctaactcgtgagctaccctatttgcttgcctccggctgaact 23059428  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23059429 caacatgagagttctgaaatctatcaactagcagctgt 23059466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 16889264 - 16889128
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  16889264 atacatgtaggtacatcatcaatcacatgggagctaggattagatagggctgc-tgagctaactcgtgagctaccctatttgcttgcctccgactgaact 16889166  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    |||||||||||||||||||||||||||||||| |||||    
T  16889165 caacatgagagttctgaaatctatcaactagcggctgt 16889128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 37856958 - 37857091
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||||||||||||| | ||||||| | |||||||  ||| | ||||||| ||||||||||||||| |||||||||||||||| | ||||||    
T  37856958 atacatgtaggtatatcatcaataatatgggggttgggattaggcaggaccgcctgagctaactcgtgagctactctatttgcttgcctcctgttgaact 37857057  T
Q  253 caacatgagagttctgaaatctatcaactagcag 286  Q
    |||||||||||||||||||||||||  |||||||    
T  37857058 caacatgagagttctgaaatctatcctctagcag 37857091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 35097000 - 35096902
Alignment:
Q  184 ggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatcaacta 282  Q
    |||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||| |   ||||||| ||||||||||||||||||||||| ||||    
T  35097000 ggctaggattagatagggttgtctgagctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttctgaaatctatccacta 35096902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 46078557 - 46078465
Alignment:
Q  177 acatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaa 271  Q
    ||||||||||||||||||| ||||| || || ||||||||||||||| ||| |||||| |||||||  | ||| ||| |||||||||||||||||    
T  46078557 acatgggggctaggattaggtaggg-tgtctaagttaactcgtgagcgacc-tatttgtttgcctcttgttgagctcgacatgagagttctgaaa 46078465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 9633155 - 9633052
Alignment:
Q  179 atgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatca 278  Q
    ||||||||||| ||| ||||||  || ||||| |||||||| | | |||| |||  |||||||||   ||||||| |||||||||||||||||||||| |    
T  9633155 atgggggctagtattggataggattgtctgagctaactcgtaatcgaccccattcacttgcctcctattgaactcgacatgagagttctgaaatctatta 9633056  T
Q  279 acta 282  Q
    ||||    
T  9633055 acta 9633052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 276
Target Start/End: Original strand, 17283510 - 17283632
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||| ||||| |||||| || |||||||| ||| |||| ||||| | ||  ||||||||||||||||  |||| ||| | ||||||||   ||||||    
T  17283510 atacatgaaggtacatcatctataacatgggg-ctatgattggatagagttgtttgagttaactcgtgagtcaccccattcgtttgcctcctattgaact 17283608  T
Q  253 caacatgagagttctgaaatctat 276  Q
    | |||| |||||||||||||||||    
T  17283609 cgacataagagttctgaaatctat 17283632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 6969687 - 6969609
Alignment:
Q  198 agggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctat 276  Q
    ||||||| ||||| |||||||||||| |||| |||| ||| ||||    |||| || ||||||||||||||||||||||    
T  6969687 agggctgtctgagctaactcgtgagcgaccccatttacttacctcttattgaaatcgacatgagagttctgaaatctat 6969609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 11657753 - 11657620
Alignment:
Q  157 atgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaac 256  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  11657753 atgtaggtacatcatcaatcacatgagggctaggattagatagggctacctaagctaactcgtgagctaccctatttgcttgcctccggctgaactcaac 11657654  T
Q  257 atgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||||||||||||||||||||||||    
T  11657653 atgagagttctgaaatctatcaactagcagctgt 11657620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 13104357 - 13104495
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgc-ttgcctccggctgaac 251  Q
    |||||| |||||| ||| ||||| | |||||||||| ||||||| ||||||| ||||| ||||||||||||||||||| |||| |||||||  | |||||    
T  13104357 atacatataggtacatcgtcaataatatgggggctaagattagacagggctgtctgagctaactcgtgagctaccctacttgctttgcctcttgttgaac 13104456  T
Q  252 tcaacatgagagttctgaaatctatcaactagcagctgt 290  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  13104457 tcaacatgagagttctgaaatctatctactaccagctgt 13104495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 32900026 - 32899889
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    |||||| |||||  ||||||||| |  ||||||||| ||||||| |||||||| |||| |||||||||| |||||||||||| ||| |||| | ||||||    
T  32900026 atacatataggtgcatcatcaataatgtgggggctatgattagacagggctgcatgagctaactcgtgaactaccctatttgattgtctcctggtgaact 32899927  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  32899926 caacatgagagttctgaaatctatctactagcaactgt 32899889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 27862077 - 27862203
Alignment:
Q  153 atacatgtaggtatatcatcaatcacat--gggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaa 250  Q
    ||||||||||||| ||||||||| | ||  |||||||||||||||| ||||||||||           |||||||||||||||  |||||||| | ||||    
T  27862077 atacatgtaggtacatcatcaataaaatatgggggctaggattagacagggctgcct-----------tgagctaccctatttatttgcctcctgttgaa 27862165  T
Q  251 ctcaacatgagagttctgaaatctatcaactagcagct 288  Q
    |||||||||||||||||||||||||||  |||||||||    
T  27862166 ctcaacatgagagttctgaaatctatcctctagcagct 27862203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 27877824 - 27877687
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||| ||||||||| || ||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  27877824 atacatgtaggtacatcatcaataacgtggcggctaggattagacagggttgcctgagctaactcgtgagctaccctatttgcttgcctcctgctgaact 27877725  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  27877724 caacatgagagttatgaaatctatctactagcagctgt 27877687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 10395346 - 10395483
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||| | |||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  10395346 atacatgtaggtacatcatcaataacatgggggctaggatcagacatggctgcttgagctaactcgtgagctaccctatttgcttgcctcctgctgaact 10395445  T
Q  253 caacatgagagttctgaaatctatcaactagcagctgt 290  Q
     ||||| ||||||||| ||| |||||||||||||||||    
T  10395446 taacataagagttctggaatttatcaactagcagctgt 10395483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 152 - 277
Target Start/End: Complemental strand, 17321999 - 17321874
Alignment:
Q  152 catacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaac 251  Q
    ||||||||  |||| ||||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||    
T  17321999 catacatgagggtacatcatcaataatatgggggctaggattagatagggctgcttgagctaactcgtgagctaccctatttgcttgcctcctgttgaac 17321900  T
Q  252 tcaacatgagagttctgaaatctatc 277  Q
    || |||||||||||||||||||||||    
T  17321899 tcgacatgagagttctgaaatctatc 17321874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 12539235 - 12539110
Alignment:
Q  157 atgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaac 256  Q
    ||||||||| ||||||||| | |||||||||||||||||| | |||||| | || |||||||||||||| ||||||||||||||||| | ||||||| ||    
T  12539235 atgtaggtacatcatcaataatatgggggctaggattagacatggctgcatcagctaactcgtgagctatcctatttgcttgcctcctgttgaactcgac 12539136  T
Q  257 atgagagttctgaaatctatcaacta 282  Q
    ||||||||||||||||||||| ||||    
T  12539135 atgagagttctgaaatctatccacta 12539110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 40610050 - 40609930
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||| |||||||||||| ||||||||| ||||||||||||| |||  || | | ||||||    
T  40610050 atacatgtatgtacatcatcaataacgtgggggttaggattagacagggctgcctgaattaactcgtaagctaccctatttacttatcttctgatgaact 40609951  T
Q  253 caacatgagagttctgaaatc 273  Q
    |||||||||||||||||||||    
T  40609950 caacatgagagttctgaaatc 40609930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 2114471 - 2114350
Alignment:
Q  161 aggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatga 260  Q
    ||||| |||||| || ||| ||||||||||||| ||||||||||||| || ||| |||||||| |||| ||| |||| | ||| | ||||||| ||||||    
T  2114471 aggtagatcatctataacacgggggctaggattggatagggctgcctaagctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatga 2114372  T
Q  261 gagttctgaaatctatcaacta 282  Q
    |||||||||||||||| |||||    
T  2114371 gagttctgaaatctattaacta 2114350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 3601235 - 3601338
Alignment:
Q  179 atgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctatca 278  Q
    |||||| ||| |||||||||||| || || || |||||||||||| |||  ||| ||||||||||   ||||||| |||||||||||||||||||||| |    
T  3601235 atggggactatgattagatagggttgtctaagctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttctgaaatctatta 3601334  T
Q  279 acta 282  Q
    ||||    
T  3601335 acta 3601338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 21339 - 21462
Alignment:
Q  153 atacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagttaactcgtgagctaccctatttgcttgcctccggctgaact 252  Q
    |||||||| |||| |||||||||   ||||||||||||||||||||||||| | |||| |||||  ||||||||||||||| ||||||||| | ||||||    
T  21339 atacatgtgggtacatcatcaatagtatgggggctaggattagatagggctacttgagctaacttatgagctaccctatttccttgcctcctgttgaact 21438  T
Q  253 caacatgagagttctgaaatctatc 277  Q
    | |||||||| ||||||||||||||    
T  21439 cgacatgaga-ttctgaaatctatc 21462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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