View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10378_low_14 (Length: 285)

Name: NF10378_low_14
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10378_low_14
NF10378_low_14
[»] chr2 (5 HSPs)
chr2 (7-277)||(2842868-2843155)
chr2 (221-277)||(42532725-42532782)
chr2 (222-259)||(40210073-40210110)
chr2 (221-257)||(12784406-12784442)
chr2 (220-260)||(18876926-18876966)
[»] chr1 (5 HSPs)
chr1 (217-277)||(46281460-46281520)
chr1 (225-277)||(52267235-52267286)
chr1 (221-268)||(52437522-52437570)
chr1 (223-259)||(5771753-5771789)
chr1 (225-268)||(30536023-30536067)
[»] chr7 (9 HSPs)
chr7 (217-277)||(46829503-46829563)
chr7 (217-277)||(1471278-1471338)
chr7 (223-259)||(41189549-41189585)
chr7 (227-277)||(29855260-29855311)
chr7 (223-277)||(35452560-35452614)
chr7 (225-277)||(6269398-6269451)
chr7 (221-277)||(18111598-18111655)
chr7 (223-259)||(29723932-29723968)
chr7 (232-271)||(31711929-31711969)
[»] chr5 (10 HSPs)
chr5 (221-277)||(6940137-6940193)
chr5 (217-277)||(18695342-18695402)
chr5 (216-259)||(37172760-37172804)
chr5 (225-259)||(41321286-41321320)
chr5 (225-277)||(6758777-6758830)
chr5 (223-259)||(11954461-11954497)
chr5 (223-259)||(14532534-14532570)
chr5 (221-268)||(26686909-26686957)
chr5 (221-268)||(26956640-26956688)
chr5 (223-259)||(33598992-33599028)
[»] chr3 (7 HSPs)
chr3 (217-277)||(27718773-27718833)
chr3 (221-271)||(49021739-49021790)
chr3 (217-277)||(29573343-29573403)
chr3 (214-277)||(45754659-45754722)
chr3 (223-259)||(3953480-3953516)
chr3 (225-277)||(20080105-20080156)
chr3 (223-259)||(24095411-24095447)
[»] chr6 (5 HSPs)
chr6 (217-271)||(33651044-33651099)
chr6 (217-276)||(34570583-34570642)
chr6 (221-268)||(16368042-16368090)
chr6 (225-277)||(2689052-2689103)
chr6 (225-268)||(13423000-13423044)
[»] chr4 (7 HSPs)
chr4 (217-277)||(37514119-37514179)
chr4 (217-277)||(42815428-42815488)
chr4 (217-268)||(3078904-3078955)
chr4 (223-259)||(149490-149526)
chr4 (223-259)||(39158135-39158171)
chr4 (225-268)||(44257725-44257769)
chr4 (221-268)||(49585022-49585070)
[»] chr8 (3 HSPs)
chr8 (217-277)||(10644789-10644849)
chr8 (223-259)||(29440527-29440563)
chr8 (221-268)||(43285958-43286006)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 2843155 - 2842868
Alignment:
Q  7 aaaactgtacttgtcaatttaattgtactggaatgaaatcttgt----actactactattcctttctcatcttttcaaagacacttaaagaaaaaattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2843155 aaaactgtacttgtcaatttaattgtactggaatgaaatcttgtttgtactactactattcctttctcatcttttcaaagacacttaaagaaaaaattgt 2843056  T
Q  103 atttactttctcaattattgatcacatcatatattcctatcatatttggagttttttatgtcgacacccttgaacatcattctgcatatgtatttaatct 202  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  2843055 atttactttctcaattatagatcatatcatatattcctatcatatttggagttgtttatgtcgacatccttgaacatcattctgcatatgtatttaatct 2842956  T
Q  203 aaagagaaaaaatatt-------------tgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||||||||||||             |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  2842955 aaagagaaaaaatatttgtacaaccattttgtaataattttggtgacaactttctctctcatactcacatatatttttattttatctc 2842868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 42532782 - 42532725
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatatttttatttcatctc 277  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||||| || |||||    
T  42532782 taataacttttgtgacaactttctttctcatactcacattatatttttactttatctc 42532725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 40210110 - 40210073
Alignment:
Q  222 aataattttggtgacaactttctttctcatactcacat 259  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  40210110 aataatttttgtgacaactttctctctcatactcacat 40210073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 12784442 - 12784406
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcac 257  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  12784442 taataatttttgtgacaactttctctctcatactcac 12784406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 18876966 - 18876926
Alignment:
Q  220 gtaataattttggtgacaactttctttctcatactcacata 260  Q
    ||||||||||| ||||||||||||| ||||||| |||||||    
T  18876966 gtaataatttttgtgacaactttctctctcatattcacata 18876926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 46281460 - 46281520
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| |||||| || |||||    
T  46281460 tttgtaataatttttgtgacaactttctctctcatactcacatatgtttttactttatctc 46281520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 52267235 - 52267286
Alignment:
Q  225 aattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||| |||||    
T  52267235 aatttttgtgacaactttctctctcatactcacat-tatttttattttatctc 52267286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 52437522 - 52437570
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  52437522 taataatttttgtgacaactttctctctcatactcacattatattttta 52437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 5771789 - 5771753
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  5771789 ataatttttgtgacaactttctctctcatactcacat 5771753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 30536023 - 30536067
Alignment:
Q  225 aattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||| ||||||||||||| ||||||||||||| ||||||||||    
T  30536023 aatttttgtgacaactttctctctcatactcacattatattttta 30536067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 46829503 - 46829563
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||| |||||| || |||||    
T  46829503 tttgtaacaatttttgtgacaactttctctctcatactcacatatgtttttactttatctc 46829563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 1471338 - 1471278
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||| || ||| ||||||||||||| |||||||||||||||| |||||| || |||||    
T  1471338 tttgtaacaacttttgtgacaactttctctctcatactcacatatgtttttactttatctc 1471278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 41189585 - 41189549
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41189585 ataatttttgtgacaactttctttctcatactcacat 41189549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 29855260 - 29855311
Alignment:
Q  227 ttttggtgacaactttctttctcatactcaca-tatatttttatttcatctc 277  Q
    |||| ||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  29855260 ttttagtgacaactttctctctcatactcacattatatttttacttcatctc 29855311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 35452614 - 35452560
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    |||||||| ||||||||||||| |||||||||||||||  |||||| || |||||    
T  35452614 ataatttttgtgacaactttctctctcatactcacataattttttactttatctc 35452560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 6269398 - 6269451
Alignment:
Q  225 aattttggtgacaactttctttctcatactcaca-tatatttttatttcatctc 277  Q
    |||||| ||||||||||||| ||||||||||||| ||||||||| ||| |||||    
T  6269398 aatttttgtgacaactttctctctcatactcacattatatttttgttttatctc 6269451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 18111655 - 18111598
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatatttttatttcatctc 277  Q
    |||||||||| ||||||| ||||| ||||||||||||| |||||||||| || |||||    
T  18111655 taataatttttgtgacaattttctctctcatactcacattatatttttactttatctc 18111598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 29723968 - 29723932
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  29723968 ataatttttgtgacaactttctctctcatactcacat 29723932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 31711969 - 31711929
Alignment:
Q  232 gtgacaactttctttctcatactcacat-atatttttattt 271  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  31711969 gtgacaactttctttctcatactcacatcatattttcattt 31711929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 6940193 - 6940137
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    |||||||||| ||||||||||||| |||||||||||||||| |||||| || |||||    
T  6940193 taataatttttgtgacaactttctctctcatactcacatatgtttttactttatctc 6940137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 18695342 - 18695402
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||| || ||| ||||||||||||| |||||||||||||||| |||||| || |||||    
T  18695342 tttgtaacaacttttgtgacaactttctctctcatactcacatatgtttttactttatctc 18695402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 37172804 - 37172760
Alignment:
Q  216 atttgtaataa-ttttggtgacaactttctttctcatactcacat 259  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  37172804 atttgtaataactttttgtgacaactttctttctcatactcacat 37172760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 41321286 - 41321320
Alignment:
Q  225 aattttggtgacaactttctttctcatactcacat 259  Q
    |||||| ||||||||||||||||||||||||||||    
T  41321286 aatttttgtgacaactttctttctcatactcacat 41321320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 6758830 - 6758777
Alignment:
Q  225 aattttggtgacaactttctttctcatactcaca-tatatttttatttcatctc 277  Q
    |||||| ||||||||||||| ||| ||||||||| ||||||||||||| |||||    
T  6758830 aatttttgtgacaactttctctcttatactcacattatatttttattttatctc 6758777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 11954461 - 11954497
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  11954461 ataatttttgtgacaactttctctctcatactcacat 11954497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 14532534 - 14532570
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  14532534 ataatttttgtgacaactttctctctcatactcacat 14532570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 26686909 - 26686957
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||||||| ||||||||||||| ||||||| ||||| ||||||||||    
T  26686909 taataatttttgtgacaactttctctctcatattcacattatattttta 26686957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 26956640 - 26956688
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||||||| ||||||||||||| ||||||| ||||| ||||||||||    
T  26956640 taataatttttgtgacaactttctctctcatattcacattatattttta 26956688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 33598992 - 33599028
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| |||| |||||||||||||||||||||||    
T  33598992 ataatttttgtgataactttctttctcatactcacat 33599028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 27718833 - 27718773
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||| || ||| ||||||||||||| |||||||||||||||| ||||||||| |||||    
T  27718833 tttgtaacaacttttgtgacaactttctctctcatactcacatatgtttttattttatctc 27718773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 49021739 - 49021790
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatatttttattt 271  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||||||||    
T  49021739 taataacttttgtgacaactttctttctcatactcacattatatttttattt 49021790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 29573403 - 29573343
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||| || ||| ||||||||||||| |||||||||||||||| |||||| || |||||    
T  29573403 tttgtaacaacttttgtgacaactttctctctcatactcacatatgtttttactttatctc 29573343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 45754659 - 45754722
Alignment:
Q  214 atatttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||||||||| |||  |||||||||||| ||| ||||||||||||| ||||| || |||||    
T  45754659 atatttgtaataacttttatgacaactttctctctaatactcacatataattttactttatctc 45754722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 3953516 - 3953480
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  3953516 ataatttttgtgacaactttctctctcatactcacat 3953480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 20080105 - 20080156
Alignment:
Q  225 aattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    |||||| ||||||||||||| |||||||||||||| |||||||| || |||||    
T  20080105 aatttttgtgacaactttctctctcatactcacat-tatttttactttatctc 20080156  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 24095447 - 24095411
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  24095447 ataatttttgtgacaactttctctctcatactcacat 24095411  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 33651044 - 33651099
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcaca-tatatttttattt 271  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||    
T  33651044 tttgtaataatttttgtgacaactttctctctaatactcacattatatttttattt 33651099  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 34570642 - 34570583
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatct 276  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||| |||| |||| ||||    
T  34570642 tttgtaataacttttgtgacaactttctctctcatactcacatatgttttcattttatct 34570583  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 16368090 - 16368042
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||||||| || |||||||||||||||||||||||| ||||||||||    
T  16368090 taataatttttgtaacaactttctttctcatactcacattatattttta 16368042  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 2689103 - 2689052
Alignment:
Q  225 aattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    |||||| ||||||||||||| |||||||||||||| |||||||| || |||||    
T  2689103 aatttttgtgacaactttctctctcatactcacat-tatttttactttatctc 2689052  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 13423000 - 13423044
Alignment:
Q  225 aattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||| ||||||||||||| ||||||||||||| ||||||||||    
T  13423000 aatttttgtgacaactttctctctcatactcacattatattttta 13423044  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 37514179 - 37514119
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||| || ||| ||||||||||||| |||||||||||||||| |||||| || |||||    
T  37514179 tttgtaacaacttttgtgacaactttctctctcatactcacatatgtttttactttatctc 37514119  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 42815428 - 42815488
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||| || ||| ||||||||||||| |||||||||||||||| |||||| || |||||    
T  42815428 tttgtaacaacttttgtgacaactttctctctcatactcacatatgtttttactttatctc 42815488  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 3078955 - 3078904
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatattttta 268  Q
    ||||||| || ||| ||||||||||||| |||||||||||||||| ||||||    
T  3078955 tttgtaacaacttttgtgacaactttctctctcatactcacatatgttttta 3078904  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 149526 - 149490
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  149526 ataatttttgtgacaactttctctctcatactcacat 149490  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 39158135 - 39158171
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  39158135 ataatttttgtgacaactttctctctcatactcacat 39158171  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 44257769 - 44257725
Alignment:
Q  225 aattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||| ||||||||||||| ||||||||||||| ||||||||||    
T  44257769 aatttttgtgacaactttctctctcatactcacattatattttta 44257725  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 49585022 - 49585070
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||||||| | ||||||||||| ||||||||||||| ||||||||||    
T  49585022 taataatttttgggacaactttctctctcatactcacattatattttta 49585070  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 10644849 - 10644789
Alignment:
Q  217 tttgtaataattttggtgacaactttctttctcatactcacatatatttttatttcatctc 277  Q
    ||||||| || ||| ||||||||||||| ||||||| |||||||| |||||| || |||||    
T  10644849 tttgtaacaacttttgtgacaactttctctctcataatcacatatgtttttactttatctc 10644789  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 29440563 - 29440527
Alignment:
Q  223 ataattttggtgacaactttctttctcatactcacat 259  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  29440563 ataacttttgtgacaactttctttctcatactcacat 29440527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 43286006 - 43285958
Alignment:
Q  221 taataattttggtgacaactttctttctcatactcaca-tatattttta 268  Q
    |||||| ||| ||||||||||||| ||||||||||||| ||||||||||    
T  43286006 taataacttttgtgacaactttctctctcatactcacattatattttta 43285958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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