View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_low_15 (Length: 270)
Name: NF10378_low_15
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 52088412 - 52088188
Alignment:
| Q |
30 |
ggacaaacagacacaaagcacccggtttgagtgatagcaatacaaataacaatatta---nnnnnnnnnnnnnnnnnagtaatatgatataaatcatata |
126 |
Q |
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| T |
52088412 |
ggacaaacagacacaaaacaccccgttttagtgatagcaatacaaataacaatattaatgatgatgatgatgataatagtaatatgatataaatcataca |
52088313 |
T |
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| Q |
127 |
cacacaaagttttccaaatacactattatgagatctagtcatcagttagttagtacatgaactaacatcggttgtgtaggaggtggtaatgacgtgtcaa |
226 |
Q |
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| T |
52088312 |
cacacaaagttttccaaatacaccattatgagatctagtcatc----agttactacatgaactaacatcggttgtgtaggaggtggtaatgatgtgtcaa |
52088217 |
T |
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| Q |
227 |
cgagaggtgaagtttgttgaattgttatg |
255 |
Q |
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| T |
52088216 |
cgagaggtgaagtttgttgaattgttatg |
52088188 |
T |
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