View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_low_16 (Length: 258)
Name: NF10378_low_16
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 3244387 - 3244628
Alignment:
| Q |
17 |
atgaatctggacatatgatgaggacctccatcaagagtggtaatattaaatagtcatatttctttttacaaggcctcaagcttctgaaaattttgcaacc |
116 |
Q |
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| T |
3244387 |
atgaatctggacatatgatgaggacctccatcaagagtggtaatattaaatagtcatatttctttttacaaggcctcaagcttctgaaaattttgcaacc |
3244486 |
T |
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| Q |
117 |
ggtaaattttgtgtattcagcgatagcgatgtaaatgctgatccgatggtgnnnnnnncctacataagatagagtagcatttaacttttattttaactag |
216 |
Q |
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| T |
3244487 |
ggtaaattttgtgtattcagcgatagcaatgtaaatgctgatccgatggtgtttttttcctacataagatagagtagcatttaacttttattttaactag |
3244586 |
T |
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| Q |
217 |
agcatttagaggcaccaatgctgagaattttcagtttacacc |
258 |
Q |
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| T |
3244587 |
agcatttagaggcaccaatgctgagaattttcagtttacacc |
3244628 |
T |
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