View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10378_low_17 (Length: 250)

Name: NF10378_low_17
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10378_low_17
NF10378_low_17
[»] chr1 (8 HSPs)
chr1 (67-237)||(3244782-3244952)
chr1 (121-167)||(42397695-42397741)
chr1 (113-169)||(38651499-38651555)
chr1 (110-146)||(52013818-52013854)
chr1 (116-146)||(15579410-15579440)
chr1 (113-146)||(15489357-15489390)
chr1 (122-170)||(1730825-1730873)
chr1 (111-171)||(41638398-41638458)
[»] chr7 (11 HSPs)
chr7 (107-169)||(5373143-5373205)
chr7 (113-170)||(45593808-45593865)
chr7 (115-165)||(33894549-33894599)
chr7 (114-169)||(46213728-46213783)
chr7 (112-170)||(31341117-31341175)
chr7 (111-145)||(39359955-39359989)
chr7 (112-170)||(49060463-49060521)
chr7 (107-164)||(6552365-6552422)
chr7 (113-146)||(7244626-7244659)
chr7 (111-163)||(3610836-3610888)
chr7 (121-202)||(27548195-27548278)
[»] chr6 (13 HSPs)
chr6 (112-170)||(2514625-2514683)
chr6 (112-170)||(24774681-24774739)
chr6 (113-163)||(31668781-31668831)
chr6 (113-146)||(4247747-4247780)
chr6 (113-168)||(32386190-32386245)
chr6 (104-170)||(29274318-29274384)
chr6 (104-168)||(264285-264350)
chr6 (113-170)||(3155100-3155157)
chr6 (121-170)||(20671954-20672003)
chr6 (111-168)||(24332865-24332921)
chr6 (106-146)||(5899268-5899308)
chr6 (114-166)||(10452453-10452505)
chr6 (111-162)||(33737504-33737556)
[»] chr3 (12 HSPs)
chr3 (112-170)||(44374733-44374791)
chr3 (112-170)||(41028940-41028998)
chr3 (121-170)||(42039091-42039140)
chr3 (119-170)||(3757978-3758029)
chr3 (111-170)||(33307669-33307728)
chr3 (114-168)||(36189491-36189545)
chr3 (121-170)||(20192695-20192744)
chr3 (113-170)||(27792796-27792853)
chr3 (114-170)||(905059-905115)
chr3 (122-170)||(1395604-1395652)
chr3 (112-144)||(28842972-28843004)
chr3 (112-168)||(51130659-51130715)
[»] scaffold0590 (1 HSPs)
scaffold0590 (114-170)||(1163-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (114-170)||(2756-2812)
[»] chr4 (12 HSPs)
chr4 (110-170)||(54325126-54325186)
chr4 (114-201)||(8422895-8422982)
chr4 (111-170)||(25487634-25487693)
chr4 (111-170)||(47970240-47970299)
chr4 (113-170)||(4191663-4191721)
chr4 (113-146)||(2980584-2980617)
chr4 (107-144)||(30079501-30079538)
chr4 (108-145)||(46415906-46415943)
chr4 (121-170)||(51044548-51044597)
chr4 (113-170)||(51555956-51556013)
chr4 (121-169)||(4798649-4798697)
chr4 (112-144)||(15511450-15511482)
[»] chr5 (11 HSPs)
chr5 (107-170)||(20982224-20982287)
chr5 (112-166)||(26516221-26516275)
chr5 (122-170)||(7096216-7096264)
chr5 (111-170)||(36539668-36539727)
chr5 (113-155)||(2569806-2569848)
chr5 (113-171)||(29115301-29115359)
chr5 (112-170)||(31694441-31694499)
chr5 (113-166)||(13224353-13224406)
chr5 (113-170)||(39257475-39257532)
chr5 (121-165)||(29588812-29588856)
chr5 (110-170)||(32059678-32059737)
[»] scaffold0024 (1 HSPs)
scaffold0024 (112-170)||(27499-27557)
[»] chr8 (9 HSPs)
chr8 (112-170)||(14482125-14482183)
chr8 (114-146)||(2342478-2342510)
chr8 (114-170)||(34770817-34770873)
chr8 (113-167)||(35298570-35298624)
chr8 (113-146)||(13652139-13652172)
chr8 (113-146)||(13710782-13710815)
chr8 (117-146)||(40868248-40868277)
chr8 (113-145)||(12972780-12972812)
chr8 (118-170)||(29973010-29973062)
[»] chr2 (12 HSPs)
chr2 (111-170)||(17952790-17952849)
chr2 (113-168)||(18962129-18962184)
chr2 (115-170)||(38239640-38239695)
chr2 (112-170)||(33197328-33197386)
chr2 (114-168)||(43808501-43808555)
chr2 (113-146)||(11393768-11393801)
chr2 (113-146)||(11410429-11410462)
chr2 (121-170)||(25609728-25609777)
chr2 (121-166)||(41039739-41039784)
chr2 (104-199)||(2416227-2416325)
chr2 (114-170)||(31461363-31461419)
chr2 (121-169)||(44443252-44443300)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 67 - 237
Target Start/End: Original strand, 3244782 - 3244952
Alignment:
Q  67 tgacatgtaatcaaaatgaacacacaatatttaaaaccacaagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3244782 tgacatgtaatcaaaatgaacacacaatatttaaaaccacaagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 3244881  T
Q  167 gtcattattttgatgtaagttagaagctgttttcattagttgtcgtgagtttatggaaataagttgaaaat 237  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3244882 gtcattattttgatgcaagttagaagctgttttcattagttgtcgtgagtttatggaaataagttgaaaat 3244952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 42397695 - 42397741
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaag 167  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  42397695 taagtgcttatgtataagctatttctgtaacaaaacataaaataaag 42397741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 38651555 - 38651499
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 169  Q
    ||||||||||||||||||||||||||||| ||||   |||||| ||||| |||||||    
T  38651555 ttatcatgtaagtgcttatgtataagctaattctataacaaaagataaactaaagtc 38651499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 52013818 - 52013854
Alignment:
Q  110 tacttatcatgtaagtgcttatgtataagctatttct 146  Q
    |||||||||||||| ||||||||||||||||||||||    
T  52013818 tacttatcatgtaaatgcttatgtataagctatttct 52013854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 15579410 - 15579440
Alignment:
Q  116 tcatgtaagtgcttatgtataagctatttct 146  Q
    |||||||||||||||||||||||||||||||    
T  15579410 tcatgtaagtgcttatgtataagctatttct 15579440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 15489357 - 15489390
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||||| ||||||||||||||||||||||||||    
T  15489357 ttatcatttaagtgcttatgtataagctatttct 15489390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 1730825 - 1730873
Alignment:
Q  122 aagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||||||||||||||||||| ||  || ||| ||||||||||||||    
T  1730825 aagtgcttatgtataagctatttttttaaccaaagataaaataaagtca 1730873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 41638458 - 41638398
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtcat 171  Q
    ||||||||| |||||||||||||||||  ||||| | | ||| || |||||||||||||||    
T  41638458 acttatcatataagtgcttatgtataatttatttatagaacacaagataaaataaagtcat 41638398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 5373143 - 5373205
Alignment:
Q  107 aagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 169  Q
    |||| ||||||||||||||||||||||||| |||||||||   |||||| |||||||||||||    
T  5373143 aagtgcttatcatgtaagtgcttatgtatatgctatttctataacaaaagataaaataaagtc 5373205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 45593865 - 45593808
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||| ||| ||||||||||||||||||||||   |||||||||||||||||||||    
T  45593865 ttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtca 45593808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 33894549 - 33894599
Alignment:
Q  115 atcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataa 165  Q
    ||||||||||||||||||||||||||||||||   |||||| |||||||||    
T  33894549 atcatgtaagtgcttatgtataagctatttctataacaaaagataaaataa 33894599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 46213728 - 46213783
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 169  Q
    |||||| |||||||||||||| |||||||||||   |||||| |||||||||||||    
T  46213728 tatcatataagtgcttatgtaaaagctatttctataacaaaatataaaataaagtc 46213783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 31341117 - 31341175
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||| ||| |||||||||||||||||||| |   |||||| ||||||||||||||    
T  31341117 cttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaataaagtca 31341175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 39359955 - 39359989
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttc 145  Q
    |||||||||||||||||| ||||||||||||||||    
T  39359955 acttatcatgtaagtgctcatgtataagctatttc 39359989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 49060463 - 49060521
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||| |||||  |||||||||||||||||||   |||||| ||||||||||||||    
T  49060463 cttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagtca 49060521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 6552422 - 6552365
Alignment:
Q  107 aagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaata 164  Q
    ||||||||||||| |||||||||||||| ||| |||||||   |||||| ||||||||    
T  6552422 aagtacttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaata 6552365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 7244626 - 7244659
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||||| ||||||||||||||||||||||||||    
T  7244626 ttatcatataagtgcttatgtataagctatttct 7244659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 3610888 - 3610836
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaat 163  Q
    |||| |||| ||||||||||||||||||||||||||   |||||| |||||||    
T  3610888 acttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaat 3610836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 27548195 - 27548278
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc--attattttgatgtaagttagaagctgttttcat 202  Q
    ||||||||||| ||||||||||||| |   ||||| |||||||||||||  ||| |||| || |||| || |||||||||||||    
T  27548195 taagtgcttatctataagctatttccttagcaaaagataaaataaagtctaattgttttcatttaagctataagctgttttcat 27548278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 2514625 - 2514683
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||||||||||||||||||||||||||||   | |||| ||||||||||||||    
T  2514625 cttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagtca 2514683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 24774681 - 24774739
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||||||||||||| ||||| ||||||||   |||||| ||||||||||||||    
T  24774681 cttatcatgtaagtgcttatatataaactatttctataacaaaatataaaataaagtca 24774739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 31668831 - 31668781
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaat 163  Q
    ||||||| ||||||||||||||||||||||||||   ||||||||||||||    
T  31668831 ttatcatataagtgcttatgtataagctatttctataacaaaacataaaat 31668781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 4247780 - 4247747
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||||||||||||||||||||||||||||||||    
T  4247780 ttatcatgtaagtgcttatgtataagctatttct 4247747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 32386245 - 32386190
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 168  Q
    ||||||| |||||||||||||||||||||||||   || |||| ||||||||||||    
T  32386245 ttatcatataagtgcttatgtataagctatttcacttagaaaagataaaataaagt 32386190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 29274384 - 29274318
Alignment:
Q  104 cacaagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||| ||||||||  || ||||||||||||||||||||||    ||||| ||||||||||||||    
T  29274384 cacaagttcttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtca 29274318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 264285 - 264350
Alignment:
Q  104 cacaagtacttatcatg-taagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 168  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||    ||||| ||||||||||||    
T  264285 cacaagtgcttatcatgataagtgcttatatataagctatttctaaagcaaaagataaaataaagt 264350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 3155100 - 3155157
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||| ||| || ||||||||||||||| |||| ||||||| |||||| |||||||    
T  3155100 ttatcatataaatggttatgtataagctatctcttttacaaaagataaaacaaagtca 3155157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 20672003 - 20671954
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||| ||||||||||||||||||| |  ||||| ||||||||||||||    
T  20672003 taagtgattatgtataagctatttctagatcaaaagataaaataaagtca 20671954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 24332865 - 24332921
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 168  Q
    ||||||| | |||||| |||||||||||||||||||| || |||| ||||||||||||    
T  24332865 acttatcctataagtgattatgtataagctatttctt-taaaaaagataaaataaagt 24332921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 5899268 - 5899308
Alignment:
Q  106 caagtacttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||| ||||||||||||||| |||| ||||||||||||||    
T  5899268 caagtgcttatcatgtaagtgtttatatataagctatttct 5899308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 10452505 - 10452453
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 166  Q
    |||||| | ||||||||||||||||||||||||   |||||| ||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaaatataaaataaa 10452453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 33737504 - 33737556
Alignment:
Q  111 acttatcatgt-aagtgcttatgtataagctatttcttgtacaaaacataaaa 162  Q
    ||||||||||| |||||||||||||| ||||||||||   |||||||||||||    
T  33737504 acttatcatgttaagtgcttatgtatcagctatttctgtaacaaaacataaaa 33737556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 44374791 - 44374733
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||| |||||||||||||||||||||| ||||  |||||| ||||||||||||||    
T  44374791 cttatcatataagtgcttatgtataagctatatctttaacaaaagataaaataaagtca 44374733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 41028998 - 41028940
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||| ||||||||||||||||||||||||||   |||||| | ||||||||||||    
T  41028998 cttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtca 41028940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 42039091 - 42039140
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  42039091 taagtgcttatgtataagctatttctgtaacaaaaaataaaataaagtca 42039140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 3757978 - 3758029
Alignment:
Q  119 tgtaagtgcttatgtataagctatttcttgt-acaaaacataaaataaagtca 170  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  3757978 tgtaagtgcttatgtataagctattt-ttgtaacaaaatataaaataaagtca 3758029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 33307728 - 33307669
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||||| |||||||||||||||||||||||||    |||||| || |||||||||||    
T  33307728 acttatcatataagtgcttatgtataagctatttcagtaacaaaatatgaaataaagtca 33307669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 36189491 - 36189545
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 168  Q
    |||||| ||||||  ||||||||||||||||||  ||||||| ||||||||||||    
T  36189491 tatcatataagtgagtatgtataagctatttctcttacaaaagataaaataaagt 36189545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 20192744 - 20192695
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||||||||||||||||| |   |||||| ||||||||||||||    
T  20192744 taagtgcttatgtataagctatttatataacaaaagataaaataaagtca 20192695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 27792796 - 27792853
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||| |||||||||||||||||||||||||    |||||| ||||||||| ||||    
T  27792796 ttatcatataagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtca 27792853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 905115 - 905059
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||| |||| ||||| |||||||||||||||   |||||| ||||||||||||||    
T  905115 tatcatataagcgcttaagtataagctatttctataacaaaagataaaataaagtca 905059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 1395604 - 1395652
Alignment:
Q  122 aagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||| ||||||||||||||||||   |||||| ||||||||||||||    
T  1395604 aagtgcatatgtataagctatttctataacaaaagataaaataaagtca 1395652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 28843004 - 28842972
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctattt 144  Q
    |||||||| ||||||||||||||||||||||||    
T  28843004 cttatcatataagtgcttatgtataagctattt 28842972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 51130659 - 51130715
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 168  Q
    ||||||||| ||||||||||| ||||| |||||| | ||||||| ||||| ||||||    
T  51130659 cttatcatgcaagtgcttatgcataagttatttcctttacaaaagataaagtaaagt 51130715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 1219 - 1163
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||| ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtca 1163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 2756 - 2812
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||| ||||||||||||||||||||||||||   |||||| ||||||||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtca 2812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 54325186 - 54325126
Alignment:
Q  110 tacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||| ||||||||| ||||||| ||||||||  ||||||| ||||||||||||||    
T  54325186 tacttatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtca 54325126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 8422982 - 8422895
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtcattattttgatgtaagttagaagctgttttca 201  Q
    |||||| || ||||||||||||||||||||| |   | |||| |||||||||||||||| |||| || |||| || ||| ||||||||    
T  8422982 tatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagtcattgttttcatataagctataagttgttttca 8422895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 25487693 - 25487634
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||| | ||| ||||||||||||||||||||||   |||||| ||||||||||||||    
T  25487693 acttatcctttaaatgcttatgtataagctatttctataacaaaaaataaaataaagtca 25487634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 47970240 - 47970299
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||| |||| ||||||||||||||||||||||||||   |||||| ||||||| ||||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtca 47970299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 4191663 - 4191721
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacat-aaaataaagtca 170  Q
    ||||||| ||||||||||||||||||||||||||   |||||| || ||||||||||||    
T  4191663 ttatcatataagtgcttatgtataagctatttctataacaaaagataaaaataaagtca 4191721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 2980617 - 2980584
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||||| ||||||||||||||||||||||||||    
T  2980617 ttatcatataagtgcttatgtataagctatttct 2980584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 30079538 - 30079501
Alignment:
Q  107 aagtacttatcatgtaagtgcttatgtataagctattt 144  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  30079538 aagtccttatcatgtaagtgcttaagtataagctattt 30079501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 46415943 - 46415906
Alignment:
Q  108 agtacttatcatgtaagtgcttatgtataagctatttc 145  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  46415943 agtacttatcatctaagtgcttacgtataagctatttc 46415906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 51044597 - 51044548
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||| |||||||||||||||||||   |||||| ||||||||||||||    
T  51044597 taagtgtttatgtataagctatttctataacaaaagataaaataaagtca 51044548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 51556013 - 51555956
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||| |||||||||||||||||||||||  |   |||||| ||||||||||||||    
T  51556013 ttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagtca 51555956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 4798697 - 4798649
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 169  Q
    ||||||||||||||||||||||||||    ||||| |||||||||||||    
T  4798697 taagtgcttatgtataagctatttctatatcaaaagataaaataaagtc 4798649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 15511482 - 15511450
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctattt 144  Q
    ||||||||||||||||||||||||||| |||||    
T  15511482 cttatcatgtaagtgcttatgtataagttattt 15511450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 20982287 - 20982224
Alignment:
Q  107 aagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||| |||||||| ||||||||||||||||||||||||||   |||||  ||||||||||||||    
T  20982287 aagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtca 20982224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 26516221 - 26516275
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 166  Q
    |||||||| ||||||||||||||||||||||||||   |||||| ||||||||||    
T  26516221 cttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 7096264 - 7096216
Alignment:
Q  122 aagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtca 7096216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 36539668 - 36539727
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||||| ||||||||||||| |||||||||| ||   ||||| ||||||||||||||    
T  36539668 acttatcatataagtgcttatgtgtaagctatttgtttatcaaaagataaaataaagtca 36539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 2569848 - 2569806
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaa 155  Q
    ||||||| |||||||||||||||||||||||||| | ||||||    
T  2569848 ttatcatataagtgcttatgtataagctatttctcgaacaaaa 2569806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 29115359 - 29115301
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtcat 171  Q
    |||||||  |||||||||||||||||||||||||   ||||||  ||||||||||||||    
T  29115359 ttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagtcat 29115301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 31694441 - 31694499
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||| |||||||||||| ||||||||| |||   |||||||||||| ||||||||    
T  31694441 cttatcatataagtgcttatgaataagctatgtctataacaaaacataaactaaagtca 31694499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 13224353 - 13224406
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaa 166  Q
    |||||||  |||||||||||||||||||||||||   |||||| ||||||||||    
T  13224353 ttatcatagaagtgcttatgtataagctatttctataacaaaagataaaataaa 13224406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 39257532 - 39257475
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||||||||||||||||| ||||| |||   ||||||  |||||||||||||    
T  39257532 ttatcatgtaagtgcttatgtatatgctatctctataacaaaaggtaaaataaagtca 39257475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 29588812 - 29588856
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataa 165  Q
    ||||||||||||||||||||||||||   |||||| |||||||||    
T  29588812 taagtgcttatgtataagctatttctataacaaaatataaaataa 29588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 32059737 - 32059678
Alignment:
Q  110 tacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||| |||||||||||||||||||| ||| |||||   || ||||||||||||||    
T  32059737 tacttatcatataagtgcttatgtataagctgttt-ttgtaactaagataaaataaagtca 32059678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 27499 - 27557
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||||||||||||||||||||||| |||||||   ||| || ||||||||||||||    
T  27499 cttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtca 27557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 14482125 - 14482183
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||| ||||||||||||||||| ||||||||   |||||| ||||||||||||||    
T  14482125 cttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtca 14482183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 2342510 - 2342478
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttct 146  Q
    |||||||||||||||||||||||||||||||||    
T  2342510 tatcatgtaagtgcttatgtataagctatttct 2342478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 34770817 - 34770873
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||||||||||||||||| || |||||||   ||||||| ||||||||||||||    
T  34770817 tatcatgtaagtgcttatgtaaaaactatttccattacaaaagataaaataaagtca 34770873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 35298624 - 35298570
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaag 167  Q
    ||||||| |||||||||||||||||||||||||    |||||| |||||||||||    
T  35298624 ttatcatataagtgcttatgtataagctatttcagtaacaaaagataaaataaag 35298570  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 13652139 - 13652172
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||||| ||||||||||||||||||||||||||    
T  13652139 ttatcatctaagtgcttatgtataagctatttct 13652172  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 13710782 - 13710815
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||||| ||||||||||||||||||||||||||    
T  13710782 ttatcatctaagtgcttatgtataagctatttct 13710815  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 40868277 - 40868248
Alignment:
Q  117 catgtaagtgcttatgtataagctatttct 146  Q
    ||||||||||||||||||||||||||||||    
T  40868277 catgtaagtgcttatgtataagctatttct 40868248  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 12972780 - 12972812
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttc 145  Q
    ||||||| |||||||||||||||||||||||||    
T  12972780 ttatcatataagtgcttatgtataagctatttc 12972812  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 29973010 - 29973062
Alignment:
Q  118 atgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||||||| |||||||||||||||  ||| ||  |||||||||||||    
T  29973010 atgtaagtgcttatatataagctatttctttaacacaaggtaaaataaagtca 29973062  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 17952849 - 17952790
Alignment:
Q  111 acttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||||| |||| |||||| ||||||||||||||   |||||| ||||||||||||||    
T  17952849 acttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtca 17952790  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 18962184 - 18962129
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 168  Q
    ||||||||||||||||||||||| |||||||| |   |||||| ||||||||||||    
T  18962184 ttatcatgtaagtgcttatgtattagctatttttataacaaaagataaaataaagt 18962129  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 38239695 - 38239640
Alignment:
Q  115 atcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||||||| |||||||||||||||||||   |||||| ||||||| ||||||    
T  38239695 atcatgtaagtgtttatgtataagctatttctataacaaaagataaaatcaagtca 38239640  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 33197386 - 33197328
Alignment:
Q  112 cttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||||| ||||||||||| ||||||||||||||   |||||| ||| ||||||||||    
T  33197386 cttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtca 33197328  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 43808501 - 43808555
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 168  Q
    |||||| |||||| ||||||||||||||||| || ||  ||||||||||||||||    
T  43808501 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 43808555  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 11393801 - 11393768
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||||| ||||||||||||||||||||||||||    
T  11393801 ttatcatttaagtgcttatgtataagctatttct 11393768  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 11410462 - 11410429
Alignment:
Q  113 ttatcatgtaagtgcttatgtataagctatttct 146  Q
    ||||||| ||||||||||||||||||||||||||    
T  11410462 ttatcatttaagtgcttatgtataagctatttct 11410429  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 25609728 - 25609777
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    ||||||||||||||||||||||||||   | |||| ||||||||||||||    
T  25609728 taagtgcttatgtataagctatttctataagaaaagataaaataaagtca 25609777  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 41039784 - 41039739
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaa 166  Q
    ||||||||||||||||||||||||||   |||||| ||||||||||    
T  41039784 taagtgcttatgtataagctatttctgtgacaaaagataaaataaa 41039739  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 2416227 - 2416325
Alignment:
Q  104 cacaagtacttatcatgt-aagtgcttatgtataagctatttcttgta-caaaacataaaataaagt--cattattttgatgtaagttagaagctgtttt 199  Q
    ||||||| |||||||||| ||||||||||||||||| |||||| |||| ||||| ||||||| ||||   ||| ||||||| |||| || ||||||||||    
T  2416227 cacaagttcttatcatgttaagtgcttatgtataagttatttc-tgtagcaaaagataaaatgaagttaaattgttttgatataagctataagctgtttt 2416325  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 31461363 - 31461419
Alignment:
Q  114 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 170  Q
    |||||| |||||| |||| ||||||||||||||   |||||| ||||||||||||||    
T  31461363 tatcatataagtggttatatataagctatttctataacaaaagataaaataaagtca 31461419  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 44443252 - 44443300
Alignment:
Q  121 taagtgcttatgtataagctatttcttgtacaaaacataaaataaagtc 169  Q
    |||||||||||||||||||||||| |  ||||||| |||||||| ||||    
T  44443252 taagtgcttatgtataagctatttttattacaaaagataaaatatagtc 44443300  T

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