View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10378_low_18 (Length: 250)

Name: NF10378_low_18
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10378_low_18
NF10378_low_18
[»] chr3 (2 HSPs)
chr3 (1-231)||(9359250-9359480)
chr3 (2-47)||(53112066-53112111)
[»] chr8 (2 HSPs)
chr8 (4-200)||(32915190-32915386)
chr8 (1-95)||(24945373-24945467)
[»] chr1 (1 HSPs)
chr1 (4-189)||(2308164-2308349)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-186)||(520028-520213)
[»] chr7 (1 HSPs)
chr7 (113-208)||(43805529-43805624)
[»] chr4 (2 HSPs)
chr4 (154-188)||(26209499-26209533)
chr4 (156-188)||(26232059-26232091)
[»] chr2 (1 HSPs)
chr2 (1-38)||(41195218-41195255)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 9359480 - 9359250
Alignment:
Q  1 attatttggcatgcaactatttgggctatttggcaagctaggaatcatatgatcttccgaaatgaggtgaagcatgtggatgatctcttgtcggagattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9359480 attatttggcatgcaactatttgggctatttggcaagctaggaatcatatgatcttccgaaatgaggtgaagcatgtggatgatcttttgtcggagattg 9359381  T
Q  101 ttgttaattcaaggcggtggagtttgtctaggcttgatatgcaaacatgcttatattatgaatggaattggaatccacaagaatgtctattaaggaagta 200  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9359380 ttgttaattcgtggcggtggagtttgtataggcttgatatgcaaacatgcttatattatgaatggaattggaatccacaagaatgtctattaaggaagta 9359281  T
Q  201 attggttttggagctgttttatgttgctgtt 231  Q
    |||||||||||||||||||| ||||||||||    
T  9359280 attggttttggagctgttttttgttgctgtt 9359250  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 53112111 - 53112066
Alignment:
Q  2 ttatttggcatgcaactatttgggctatttggcaagctaggaatca 47  Q
    |||| |||||||||||  |||||| |||||||||||||||||||||    
T  53112111 ttatatggcatgcaacggtttggggtatttggcaagctaggaatca 53112066  T

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Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 32915386 - 32915190
Alignment:
Q  4 atttggcatgcaactatttgggctatttggcaagctaggaatcatatgatcttccgaaatgaggtgaagcatgtggatgatctcttgtcggagattgttg 103  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||| || || ||||||||||| |||||||||||||| ||| |||| ||||| |    
T  32915386 atttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatttttcgtaatgaggtgaaacatgtggatgatcttttggcggaaattgtgg 32915287  T
Q  104 ttaattcaaggcggtggagtttgtctaggcttgatatgcaaacatgcttatattatgaatggaattggaatccacaagaatgtctattaaggaagta 200  Q
    |||||||| ||||||||||||||| ||||||  |||| ||| |||| |||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  32915286 ttaattcatggcggtggagtttgtgtaggctgaatatacaagcatgtttattttatgaatggaattggaatcctcaagaatgtctatcgaggaagta 32915190  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 24945373 - 24945467
Alignment:
Q  1 attatttggcatgcaactatttgggctatttggcaagctaggaatcatatgatcttccgaaatgaggtgaagcatgtggatgatctcttgtcgga 95  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||   || ||||| |||||||||||  ||||||||||| | ||||||||    
T  24945373 attatttggcatgcaactatttggtcaatttggcaagctagaaatcattgtattttccggaatgaggtgaaatatgtggatgatttattgtcgga 24945467  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 2308164 - 2308349
Alignment:
Q  4 atttggcatgcaactatttgggctatttggcaagctaggaatcatatgatcttccgaaatgaggtgaagcatgtggatgatctcttgtcggagattgttg 103  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||  ||| ||||  |||||||| |  |||||||| ||| | ||| |||||||||| |    
T  2308164 atttggcatgcaactatatgggctatttggcaagcgaggaaccattcgattttccttaatgaggtaatacatgtggaagatattttggcggagattgtgg 2308263  T
Q  104 ttaattcaaggcggtggagtttgtctaggcttgatatgcaaacatgcttatattatgaatggaattggaatccacaagaatgtcta 189  Q
    | |||||| || |||||||||||||||| ||| |||||||||| ||  ||||||||||||||||||||||||| ||||||||||||    
T  2308264 taaattcatggaggtggagtttgtctagacttaatatgcaaacctgtctatattatgaatggaattggaatcctcaagaatgtcta 2308349  T

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Target: scaffold0001 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 520213 - 520028
Alignment:
Q  1 attatttggcatgcaactatttgggctatttggcaagctaggaatcatatgatcttccgaaatgaggtgaagcatgtggatgatctcttgtcggagattg 100  Q
    ||||||||| |||||||||||||| | ||||||||||| || |||||| | || ||||| |||||||||||   |||||||||  | |||||||| ||      
T  520213 attatttgggatgcaactatttggtcaatttggcaagcgagaaatcattttatattccggaatgaggtgaaatctgtggatgaattattgtcggaaataa 520114  T
Q  101 ttgttaattcaaggcggtggagtttgtctaggcttgatatgcaaacatgcttatattatgaatggaattggaatccacaagaatgt 186  Q
    | ||    || ||||||||| ||||| ||||||||| ||||||||| ||  |||| |||||||||||||||||||| |||||||||    
T  520113 tggtgttgtcgaggcggtggtgtttgactaggcttgttatgcaaacttgtctatactatgaatggaattggaatcctcaagaatgt 520028  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 43805529 - 43805624
Alignment:
Q  113 ggcggtggagtttgtctaggcttgatatgcaaacatgcttatattatgaatggaattggaatccacaagaatgtctattaaggaagtaattggttt 208  Q
    ||||||||||||||| ||||||| |||||||||| || |||||||||||||| | ||||||||| ||||| || || || |||||||| |||||||    
T  43805529 ggcggtggagtttgtataggcttaatatgcaaacttgtttatattatgaatgaagttggaatcctcaagagtgccttttgaggaagtagttggttt 43805624  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 26209499 - 26209533
Alignment:
Q  154 tattatgaatggaattggaatccacaagaatgtct 188  Q
    ||||||||||||| |||||||||||||||||||||    
T  26209499 tattatgaatggagttggaatccacaagaatgtct 26209533  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 26232059 - 26232091
Alignment:
Q  156 ttatgaatggaattggaatccacaagaatgtct 188  Q
    ||||||||||| |||||||||||||||||||||    
T  26232059 ttatgaatggagttggaatccacaagaatgtct 26232091  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41195255 - 41195218
Alignment:
Q  1 attatttggcatgcaactatttgggctatttggcaagc 38  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  41195255 attatttggcatgctactatttgggttatttggcaagc 41195218  T

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