View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10378_low_2 (Length: 430)

Name: NF10378_low_2
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10378_low_2
NF10378_low_2
[»] chr8 (5 HSPs)
chr8 (1-414)||(44728980-44729397)
chr8 (11-335)||(12729371-12729687)
chr8 (11-173)||(28695928-28696092)
chr8 (21-101)||(25953601-25953681)
chr8 (40-130)||(10085641-10085732)
[»] chr3 (9 HSPs)
chr3 (8-334)||(52653755-52654082)
chr3 (11-327)||(33709818-33710133)
chr3 (11-352)||(40574130-40574465)
chr3 (31-109)||(16729894-16729972)
chr3 (11-101)||(49784164-49784255)
chr3 (187-265)||(23686085-23686163)
chr3 (187-265)||(24058322-24058400)
chr3 (239-323)||(16729771-16729857)
chr3 (31-101)||(29827120-29827190)
[»] chr5 (8 HSPs)
chr5 (31-352)||(9851276-9851594)
chr5 (40-323)||(29006477-29006761)
chr5 (21-101)||(2022641-2022721)
chr5 (31-166)||(36203207-36203342)
chr5 (31-101)||(43378129-43378199)
chr5 (73-121)||(15205528-15205576)
chr5 (43-109)||(9080496-9080562)
chr5 (31-71)||(35369365-35369405)
[»] chr4 (13 HSPs)
chr4 (67-325)||(48779727-48779986)
chr4 (153-309)||(24391841-24391997)
chr4 (11-323)||(20251402-20251714)
chr4 (21-101)||(3415594-3415674)
chr4 (32-101)||(3425142-3425211)
chr4 (11-101)||(18736831-18736921)
chr4 (209-335)||(27538101-27538229)
chr4 (22-101)||(18670524-18670603)
chr4 (21-101)||(18716168-18716248)
chr4 (32-96)||(30020297-30020361)
chr4 (45-101)||(32429726-32429782)
chr4 (40-126)||(24129169-24129255)
chr4 (183-318)||(47078023-47078155)
[»] chr1 (15 HSPs)
chr1 (67-323)||(49053786-49054043)
chr1 (31-323)||(49061366-49061659)
chr1 (21-101)||(21432107-21432187)
chr1 (146-318)||(17458408-17458581)
chr1 (31-101)||(44524460-44524530)
chr1 (204-324)||(52282015-52282139)
chr1 (11-101)||(35624689-35624779)
chr1 (182-352)||(42263411-42263581)
chr1 (37-101)||(29681289-29681353)
chr1 (37-101)||(48366493-48366557)
chr1 (31-101)||(10187018-10187088)
chr1 (36-99)||(43358448-43358511)
chr1 (187-250)||(31285999-31286062)
chr1 (201-230)||(10917601-10917630)
chr1 (11-96)||(19310521-19310606)
[»] chr7 (10 HSPs)
chr7 (34-333)||(12239457-12239757)
chr7 (11-335)||(24870398-24870722)
chr7 (11-126)||(37469067-37469182)
chr7 (29-126)||(1840839-1840933)
chr7 (204-352)||(34091475-34091623)
chr7 (37-101)||(5436972-5437036)
chr7 (38-253)||(23757009-23757222)
chr7 (273-352)||(24871398-24871475)
chr7 (201-265)||(30108187-30108251)
chr7 (35-258)||(20464054-20464275)
[»] chr6 (5 HSPs)
chr6 (34-334)||(28611983-28612281)
chr6 (81-309)||(11931961-11932189)
chr6 (11-102)||(24075619-24075710)
chr6 (40-101)||(21937271-21937332)
chr6 (31-101)||(24509270-24509340)
[»] scaffold0007 (1 HSPs)
scaffold0007 (37-333)||(217731-218017)
[»] chr2 (7 HSPs)
chr2 (21-101)||(716045-716123)
chr2 (211-352)||(14218896-14219037)
chr2 (10-81)||(42779867-42779937)
chr2 (216-307)||(34681118-34681211)
chr2 (67-131)||(34680975-34681039)
chr2 (31-81)||(16272134-16272184)
chr2 (205-324)||(38327394-38327514)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 44729397 - 44728980
Alignment:
Q  1 cacgttgatgtgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatga----tgaagagtgcacataaattc 96  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  44729397 cacgttgatgtgttagaatctgtgttgagagtttgctacaataacttgatcaagaagataatgaaaatgaacatgaatgatgaagagtgcacataaattc 44729298  T
Q  97 caaagcgtgtgtgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttagga 196  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44729297 caaagcgtgtgtgggatacactaacctttatgttcaattcacccctgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttagga 44729198  T
Q  197 tacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagttatcaatttctctcgtgcactaggga 296  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  44729197 tacattggaatccttgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttacagaatgtagttgtcaatctctctcgtgcactaggga 44729098  T
Q  297 aatgaaagaatgacttaatattattttcggctgaattttttgactcacaataatgtaatgnnnnnnnnnnnnncagcctccaaagagtctctatttatag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||    
T  44729097 aatgaaagaatgacttaatattattttcggctgaattttttgactcacaataatgtaatgttctttcttttttcagcctccaaagagtctctatttatag 44728998  T
Q  397 aaaaactttcgtcctttt 414  Q
    ||||||||||||||||||    
T  44728997 aaaaactttcgtcctttt 44728980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 12729687 - 12729371
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 110  Q
    |||||||| |||||||| |  |||||||||||| |||||||||||||||         |||||||||||| ||| ||||| |||||||||| ||||||||    
T  12729687 tgttagaacctgtgttggggatctgctgcaataccttgatcaagaagat---------gaacatgatgaaaagtacacatgaattccaaagagtgtgtgg 12729597  T
Q  111 gatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatcct 210  Q
    || ||||||||||||| || | |||| ||    | ||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||  || ||||||    
T  12729596 gacacactaacctttaggtacgattcgcctccaccagttatgccaaccggatgcaaaagggttataccggcgattccccttcaggatacgatgaaatcct 12729497  T
Q  211 tgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagt--tatcaatttctctcgtgcactagggaaatgaaagaatg 308  Q
    |||| ||||||||||||||| ||| ||| |||||| ||||  |||||||| ||||  |||  | ||||||||||||||||||||| |||| ||||||||     
T  12729496 tgacatgacttgcacattcacaccaagcatatcga-caattgtagtttactgaataaagttctgtcaatttctctcgtgcactagagaaaagaaagaatt 12729398  T
Q  309 acttaatattattttcggctgaatttt 335  Q
    | ||| ||| ||||||||| |||||||    
T  12729397 atttagtataattttcggcagaatttt 12729371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 28695928 - 28696092
Alignment:
Q  11 tgttagaatctgtgttgagag--tctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgt 108  Q
    ||||||||||||||||| | |  | || ||||||||||||| ||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  28695928 tgttagaatctgtgttgggggggtttgttgcaataacttgaccaagaagatgatgaatatgaacatgatgaagaatgcgcataaattccaaagcgtgtgt 28696027  T
Q  109 gggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggta 173  Q
    |||| |||||||| |||| |||  |||| || |  | ||||||| ||||| ||||||| ||||||    
T  28696028 gggacacactaacttttaggtttgattcgccctcaccagttatgtcaaccagatgcaaaagggta 28696092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 25953681 - 25953601
Alignment:
Q  21 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||| | ||||| ||||||||||| | ||||||||||||||| ||||| ||||||||| ||||||||||||| |||||    
T  25953681 tgtgttgggggtctgatgcaataacttaaccaagaagataatgaagatgaatatgatgaagtgtgcacataaatttcaaag 25953601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 10085641 - 10085732
Alignment:
Q  40 aataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcac--ataaattccaaagcgtgtgtgggatacactaacctttatgtt 130  Q
    |||||||||| ||| ||||||| ||  ||||||||||| ||||||||||  ||||||| ||||| |||||| ||||||| ||| |||||||||    
T  10085641 aataacttgaacaaaaagataaagatgatgaacatgataaagagtgcacaaataaatttcaaagtgtgtgt-ggatacattaaactttatgtt 10085732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 52654082 - 52653755
Alignment:
Q  8 atgtgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtg 107  Q
    ||||||||||| |||||||  | || ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  52654082 atgtgttagaacctgtgtttggggtttgcggcaataacttgatcaagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaagcgtgtg 52653983  T
Q  108 tgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaat 207  Q
    ||||| ||||||||||||| ||||||||| || |  | ||||||||||||||||||||| | ||| |||||||||||||||||| |||||||| ||||||    
T  52653982 tgggacacactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaaaatggttataccggcgaatccccttcaggatacaatggaat 52653883  T
Q  208 ccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagt--tatcaatttctctcgtgcactagggaaatgaaaga 305  Q
    ||||||||||||||||||||||| | | || ||||||| ||||| |||||||||||||  |||  | |||||||  |||||||||||| |||| | ||||    
T  52653882 ccttgacgtgacttgcacattcacatcaagtgtatcga-caatggtagtttacagaataaagttctgtcaattttcctcgtgcactagagaaaagtaaga 52653784  T
Q  306 atgacttaatattattttcggctgaattt 334  Q
    |||| ||| ||| |||||| || ||||||    
T  52653783 atgatttagtataattttcagcagaattt 52653755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 33710133 - 33709818
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 110  Q
    |||||||| |||||||| | ||||||||||||| ||||| |||||| || ||   || ||||||||||||| |||||| |||||||||||||||||||||    
T  33710133 tgttagaacctgtgttggg-gtctgctgcaatatcttgaccaagaaaatgatatgaa-gaacatgatgaagtgtgcac-taaattccaaagcgtgtgtgg 33710037  T
Q  111 gatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggta-ataccggcgaatcccctttaggatacattggaatcc 209  Q
    || ||||||||||||| | || |||||||    | ||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||  | ||||||    
T  33710036 gacacactaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaaaagggtatataccggctaatcccctttaggatacgatagaatcc 33709937  T
Q  210 ttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagt--tatcaatttctctcgtgcactagggaaatgaaagaat 307  Q
    ||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||  |||  | |||| |||||| ||||||||| |||| ||||||||    
T  33709936 ttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttacagaataaagttctgtcaaattctctggtgcactagagaaaagaaagaat 33709838  T
Q  308 gacttaatattattttcggc 327  Q
    || ||| ||| |||||||||    
T  33709837 gatttagtataattttcggc 33709818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 40574130 - 40574465
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 110  Q
    ||||| ||||||||||| |  ||| ||||||||||| ||| || ||||| ||||||||||||||||   |||||||||||||||||  ||| || |||||    
T  40574130 tgttacaatctgtgttggg--tcttctgcaataactcgataaaaaagatgatgaaaatgaacatga---agagtgcacataaattctgaagtgtatgtgg 40574224  T
Q  111 gatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatcct 210  Q
    || ||||||||||||| | |  |||||||    | ||| |||  ||  |||||||| | || | || | ||||||  |||| |||||||  ||||||| |    
T  40574225 gacacactaacctttaagcttgattcacccccaccagtaatgttaattggatgcaaaatggca-tatcagcgaattaccttcaggatactatggaatctt 40574323  T
Q  211 tgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagttat--caatttctctcgtgcactagggaaatgaaagaatg 308  Q
    |||||||||||||||||||| ||  |||||||| |||||||||||||||||||||  |||| |  |||||||||||||||||||| |||| |||||||||    
T  40574324 tgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactagagaaaagaaagaatg 40574423  T
Q  309 acttaatattattttcggctgaattttttgactcacaataatgt 352  Q
    | ||||||||||||||||| |||  ||||||||||||| |||||    
T  40574424 atttaatattattttcggcagaa--ttttgactcacaagaatgt 40574465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 16729972 - 16729894
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtg 109  Q
    ||||||||||||||||||||||| ||||  ||||| ||||||||||| ||| |||||||| |||| |||||||||||||    
T  16729972 gtctgctgcaataacttgatcaataagaagatgaagatgaacatgataaagtgtgcacattaatttcaaagcgtgtgtg 16729894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 49784164 - 49784255
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatg-aagagtgcacataaattccaaag 101  Q
    |||| |||| ||||||| | |||||||||||||||||||  |||||||| ||||| |||||  ||||| ||| |||||||||||||||||||    
T  49784164 tgttggaatttgtgttgggggtctgctgcaataacttgacgaagaagatgatgaacatgaatgtgatgaaagtgtgcacataaattccaaag 49784255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 23686163 - 23686085
Alignment:
Q  187 ccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaat 265  Q
    |||||||||||||  || ||| |||||||||| ||| ||||||| ||| ||| ||||||||| || |||||||||||||    
T  23686163 ccctttaggatacgatgaaattcttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttacagaat 23686085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 24058400 - 24058322
Alignment:
Q  187 ccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaat 265  Q
    |||||||||||||  || ||| |||||||||| ||| ||||||| ||| ||| ||||||||| || |||||||||||||    
T  24058400 ccctttaggatacgatgaaattcttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttacagaat 24058322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 16729857 - 16729771
Alignment:
Q  239 gtatcgatcaatgatagtttacagaatgtagtta--tcaatttctctcgtgcactagggaaatgaaagaatgacttaatattatttt 323  Q
    ||||||||||||||||||||||| |||  |||||  |||||||   ||||||||||   ||| |||||||||| |||||||||||||    
T  16729857 gtatcgatcaatgatagtttacaaaataaagttatgtcaattttcttcgtgcactaaataaaagaaagaatgatttaatattatttt 16729771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 29827120 - 29827190
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    |||||||||||||||| || |||||| || ||||| ||||  |||||||||  || |||||||||||||||    
T  29827120 gtctgctgcaataactcgaccaagaaaatgatgaagatgactatgatgaagtttgaacataaattccaaag 29827190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 31 - 352
Target Start/End: Original strand, 9851276 - 9851594
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgtt 130  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||| |||| |||    
T  9851276 gtctgctgcaataacttgatcaaaaagatgatgaagatgaacatgatgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggtt 9851375  T
Q  131 caattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattca 230  Q
    |||||| ||  | | ||||| |||||||| |||||| ||||| |||||||||||||||||| | |||||  |||||| ||| | |||| |||||||||||    
T  9851376 caattctcc-ctaccagttaagccaaccgaatgcaaaagggt-ataccggcgaatccccttcaagatacgatggaatacttaatgtgatttgcacattca 9851473  T
Q  231 tacctagcgtatcgatcaatgatagtttacagaatgtag--ttatcaatttctctcgtgcactagggaaatgaaagaatgacttaatattattttcggct 328  Q
     ||| |||||||||| ||||| |  ||||||||||  ||  || |||  |||||| ||||||||| |||| |||||| ||| ||| ||||||||| |||     
T  9851474 caccaagcgtatcga-caatggtgttttacagaataaagttttgtcacattctcttgtgcactagagaaaagaaagactgatttagtattatttttggca 9851572  T
Q  329 gaattttttgactcacaataatgt 352  Q
    |||  |||||||||||||||||||    
T  9851573 gaa--ttttgactcacaataatgt 9851594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 323
Target Start/End: Complemental strand, 29006761 - 29006477
Alignment:
Q  40 aataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcacc 139  Q
    ||||| ||||| || ||||| || || ||||| ||||||||||||||||||||||| ||||||||||||| || |||||||| |||| |||| |||| ||    
T  29006761 aataatttgataaaaaagatgatcaagatgaatatgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgcc 29006662  T
Q  140 attgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcg 239  Q
        | |||| |  ||||| ||||||| ||||| |||  ||||||||| ||| || ||||| ||||||||||||| |||| | |||||||| ||| ||||    
T  29006661 -ccactagttttatcaaccagatgcaaaagggttatattggcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcg 29006563  T
Q  240 tatcgatcaatgatag-tttacagaatgtagt--tatcaatttctctcgtgcactagggaaatgaaagaatgacttaatattatttt 323  Q
    ||||| |||||| ||| ||||||||||  |||  | |||| || |||||||||||||  ||| ||| |||||| ||| ||| |||||    
T  29006562 tatcg-tcaatgttagttttacagaataaagttctgtcaacttatctcgtgcactagaaaaaagaatgaatgatttagtataatttt 29006477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 2022641 - 2022721
Alignment:
Q  21 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2022641 tgtgttgggggtctgctgcaataacttgatcaagaagatgatgaagatgaacatgatgaaatgtgcacataaatttcaaag 2022721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 36203342 - 36203207
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgtt 130  Q
    |||||||| |||||||| ||||||||||| ||||| |||||||| |||||  ||||||||||||| ||  |||||||||||  ||||||||||||| |||    
T  36203342 gtctgctgtaataacttcatcaagaagatgatgaagatgaacataatgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagtt 36203243  T
Q  131 caattcaccattgcgagttatgccaaccggatgcaa 166  Q
    | ||||  |    | |||||||||||||||||||||    
T  36203242 cgattcgtccccaccagttatgccaaccggatgcaa 36203207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 43378129 - 43378199
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||||||||||||||| || |||||| ||||| ||||| ||||||||| ||||||||||||| |||||    
T  43378129 gtctgctgcaataacttgaccatgaagatgatgaagatgaatatgatgaagtgtgcacataaatttcaaag 43378199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 15205576 - 15205528
Alignment:
Q  73 atgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaac 121  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  15205576 atgatgaagagtgcccataaatttcaaagcgtgtgtgggacacactaac 15205528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 9080496 - 9080562
Alignment:
Q  43 aacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtg 109  Q
    ||||||| ||||||||  ||||||||||||||||| || || |||||||||||  |||| |||||||    
T  9080496 aacttgaacaagaagaagatgaaaatgaacatgataaaaagggcacataaattttaaagagtgtgtg 9080562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 35369405 - 35369365
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaa 71  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  35369405 gtctgctgcaataatttgatcaaaaagataatgaagatgaa 35369365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 67 - 325
Target Start/End: Original strand, 48779727 - 48779986
Alignment:
Q  67 atgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaa 166  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||  ||| |||||||||||  ||||||||    
T  48779727 atgaacatgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcctctgccagttatgccaattggatgcaa 48779826  T
Q  167 gagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatg 266  Q
     ||||| ||| ||| |||||||||| |||||||  || |||| ||||||||||||||||||||| ||| ||| |||| ||||||||||||||| |||||     
T  48779827 aagggt-atatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatcaatcaatgatagtttagagaata 48779925  T
Q  267 tagtta--tcaatttctctcgtgcactagggaaatgaaagaatgacttaatattattttcg 325  Q
     |||||  ||| ||| | ||||||||||| ||||  || |||||| |||||||||||||||    
T  48779926 aagttatgtcagtttatgtcgtgcactagagaaaataatgaatgatttaatattattttcg 48779986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 153 - 309
Target Start/End: Complemental strand, 24391997 - 24391841
Alignment:
Q  153 ccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatga 252  Q
    |||||||||||||| ||||| |||||||||||||||||| | |||||| |||||||||||  |||||||||||| ||| ||| | |||||||| ||||||    
T  24391997 ccaaccggatgcaaaagggttataccggcgaatccccttcaagatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatcga-caatga 24391900  T
Q  253 tagtttacagaatgtagtta--tcaatttctctcgtgcactagggaaatgaaagaatga 309  Q
    |||||||||||||  |||||  |||||||||||| |||||||| |||| ||||||||||    
T  24391899 tagtttacagaataaagttatgtcaatttctctcatgcactagagaaaagaaagaatga 24391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 20251714 - 20251402
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 110  Q
    ||||||||||||||||| | |||||||| ||||  ||||  |||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||      
T  20251714 tgttagaatctgtgttggg-gtctgctgtaatagtttgactaagaagatgatgaagatgaacatgatgaagagtacacataaatttcaaagcgtgtgt-a 20251617  T
Q  111 gatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaat-cccctttaggatacattggaatcc 209  Q
    || |||||||  ||||  ||| |||  ||  | | ||| ||| ||||||||||||| ||||  |||| || |||| |||||| ||||||   | |||||     
T  20251616 gacacactaatatttagattccatttgcccctactagtaatgtcaaccggatgcaa-aggggtatactggtgaatcccccttcaggatatgattgaatca 20251518  T
Q  210 ttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagt--tatcaatttctctcgtgcactagggaaatgaaagaat 307  Q
    |||| ||| |||| ||||||| | | || ||||||||||||||||||||||| |||  |||  | ||||||||||||||||||||  |||| |||| |||    
T  20251517 ttgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgtgcactacagaaaagaaataat 20251418  T
Q  308 gacttaatattatttt 323  Q
    || ||| |||| ||||    
T  20251417 gatttagtattttttt 20251402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 3415674 - 3415594
Alignment:
Q  21 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||| | ||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  3415674 tgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcacataaattccaaag 3415594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 3425211 - 3425142
Alignment:
Q  32 tctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||| ||| |||||||||||||||||||    
T  3425211 tctgctgcaataacttgaccaagaagatgatgaagatgaacatgataaagtgtgcacataaattccaaag 3425142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 18736831 - 18736921
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    |||| |||| ||||||| | |||||||| ||||||||| |||||||||| || || |||||| |||||||| |||||||||||||||||||    
T  18736831 tgttggaatttgtgttgggggtctgctgtaataacttggtcaagaagatgattaagatgaacttgatgaagtgtgcacataaattccaaag 18736921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 335
Target Start/End: Original strand, 27538101 - 27538229
Alignment:
Q  209 cttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagttat--caatttctctcgtgcactagggaaatgaaagaa 306  Q
    ||||| |||||||||||||| ||||  | | |||||||||||||  |||||||||||  ||||||  ||||||||||  |||| ||| ||||| ||||||    
T  27538101 cttgatgtgacttgcacatttatactaaacatatcgatcaatgaccgtttacagaattaagttatgtcaatttctcttatgcattagagaaattaaagaa 27538200  T
Q  307 tgacttaatattattttcggctgaatttt 335  Q
    ||| ||| ||||||||||||| |||||||    
T  27538201 tgatttagtattattttcggcagaatttt 27538229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 18670524 - 18670603
Alignment:
Q  22 gtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    |||||| | ||||| ||||||||||||| ||||||||| || || ||||||||||||||| ||||||||||||| |||||    
T  18670524 gtgttgggcgtctgttgcaataacttgaccaagaagatgataaagatgaacatgatgaagtgtgcacataaatttcaaag 18670603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 18716168 - 18716248
Alignment:
Q  21 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||| | |||||||| |||||||||  ||||||||| || || |||||| |||||||| ||| |||||||||||||||    
T  18716168 tgtgttgggggtctgctgtaataacttggccaagaagatgattaagatgaacttgatgaagtgtgtacataaattccaaag 18716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 30020361 - 30020297
Alignment:
Q  32 tctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattc 96  Q
    |||||||||||||||||| ||||||||| ||||| ||||  ||||||||| ||||| ||||||||    
T  30020361 tctgctgcaataacttgaccaagaagatgatgaagatgactatgatgaagtgtgcatataaattc 30020297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 32429782 - 32429726
Alignment:
Q  45 cttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||||||| ||| ||||| ||||||||||||||| |||||||||||||| ||||    
T  32429782 cttgatcaagatgatgatgaagatgaacatgatgaagtgtgcacataaattctaaag 32429726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 24129169 - 24129255
Alignment:
Q  40 aataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaaccttta 126  Q
    ||||| ||||||||||||   ||||  ||||| |||||||| ||||||||||||||||||||| |||| |||| ||| ||| |||||    
T  24129169 aataatttgatcaagaaggcgatgatgatgaatatgatgaaaagtgcacataaattccaaagcatgtgcgggacacattaatcttta 24129255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 47078023 - 47078155
Alignment:
Q  183 aatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagt--tatcaatttc 280  Q
    |||||||||||||||||  |||||||||||||||||||| |||||| | |||      | ||||||||| |||||||||||||  |||  | ||||||||    
T  47078023 aatcccctttaggataccatggaatccttgacgtgacttacacatttacacc-----aaacgatcaatgttagtttacagaataaagttctgtcaatttc 47078117  T
Q  281 tctcgtgcactagggaaatgaaagaatgacttaatatt 318  Q
    |||||| |||||   ||| |||||||||| ||| ||||    
T  47078118 tctcgtacactacaaaaaagaaagaatgatttagtatt 47078155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 67 - 323
Target Start/End: Complemental strand, 49054043 - 49053786
Alignment:
Q  67 atgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaa 166  Q
    ||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||| |||| |||| ||    | |||||| ||||| ||||||||    
T  49054043 atgaacatgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcgattcgcccccaccagttataccaactggatgcaa 49053944  T
Q  167 gagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatg 266  Q
     ||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||| ||| |||||| ||||| ||||||||| |||     
T  49053943 aagggttataccggcgaatccccttcaggatacaatgaaatccttgacgtgacttgcacattcacaccaagcatatcga-caatggtagtttacaaaata 49053845  T
Q  267 tagttat--caatttctctcgtgcactagggaaatgaaagaatgacttaatattatttt 323  Q
     |||| |  ||||||| |||||||||||| |||  |||||||||| ||| ||| |||||    
T  49053844 aagttctgccaatttccctcgtgcactagagaagagaaagaatgatttagtataatttt 49053786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 31 - 323
Target Start/End: Complemental strand, 49061659 - 49061366
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgtt 130  Q
    |||||||||||||| || | ||| ||||| | ||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||  ||||| |||    
T  49061659 gtctgctgcaataattttaccaaaaagatgaagaagatgaacatgatgaagtgtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggtt 49061560  T
Q  131 caattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattca 230  Q
    | |||| ||    | ||||||||||||  ||||||| ||||| |||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||||    
T  49061559 cgattcgcccccaccagttatgccaactagatgcaaaagggttataccgacgaatccccttcagaatacaatggaatccttgacgtgatttgcacattca 49061460  T
Q  231 tacctagcgtatcgatcaatgatagtttacagaatgtag--ttatcaatttctctcgtgcactagggaaatgaaagaatgacttaatattatttt 323  Q
     ||| | | |||||| ||||| |||||||||||||  ||  || |||||||| |||||||||||| |||| |||||||||| ||| ||| |||||    
T  49061459 caccaaacatatcga-caatggtagtttacagaataaagttttgtcaatttccctcgtgcactagagaaaagaaagaatgatttagtataatttt 49061366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 21432187 - 21432107
Alignment:
Q  21 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||| | ||||||||||||||||||| ||||||||| ||||| ||||||||| ||||| |||||||||||||||||||    
T  21432187 tgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgctgaagtgtgcacataaattccaaag 21432107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 318
Target Start/End: Complemental strand, 17458581 - 17458408
Alignment:
Q  146 agttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcga 245  Q
    |||||||||| |||||||||| |||||| ||||| |||||||| || | ||||  ||| |||| | || |||| |||||  |||| ||| ||||||||||    
T  17458581 agttatgccagccggatgcaaaagggta-taccgacgaatccctttgaagatattttgaaatcttcgatgtgatttgcatgttcaaaccaagcgtatcga 17458483  T
Q  246 tcaatgatagtttacagaatgtagtta--tcaatttctctcgtgcactagggaaatgaaagaatgacttaatatt 318  Q
    |||||||||||||||| |||  |||||  || |||  ||||||||||||| ||||||||||||||| ||| ||||    
T  17458482 tcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtatt 17458408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 44524530 - 44524460
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||    
T  44524530 gtctgttgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattccaaag 44524460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 52282015 - 52282139
Alignment:
Q  204 gaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagtta--tcaatt--tctctcgtgcactagggaaat 299  Q
    ||||| ||||| ||||||||| ||||| ||| |||| ||||||||||| |||||||||||||  |||||  ||||||  |||||| |||||||| ||||     
T  52282015 gaatctttgacatgacttgcatattcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaa 52282114  T
Q  300 gaaagaatgacttaatattattttc 324  Q
    |||||||||| ||||||||||||||    
T  52282115 gaaagaatgatttaatattattttc 52282139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 35624689 - 35624779
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||||  ||||||| | ||||||||||||||||||| ||||||||| ||||| ||||| || | |||| |||||||||||||||||||    
T  35624689 tgttagaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaatattacgaagtgtgcacataaattccaaag 35624779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 352
Target Start/End: Original strand, 42263411 - 42263581
Alignment:
Q  182 gaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtag--ttatcaattt 279  Q
    |||||||||| ||||||| ||  |||| ||||| ||||||||||||||||||  |||||||||| ||||| || |||||| ||   ||  || || ||||    
T  42263411 gaatccccttcaggatactttaaaatctttgacatgacttgcacattcatactaagcgtatcgaacaatgttaatttacaaaacaaagttttgtcgattt 42263510  T
Q  280 ctctcgtgcactagggaaatgaaagaatgacttaatattattttcggctgaattttttgactcacaataatgt 352  Q
    |||||||||||||| |||| ||||||||||  || ||||||||| |||  | | ||||||||||||| |||||    
T  42263511 ctctcgtgcactagagaaaagaaagaatgatatagtattattttaggc--agtattttgactcacaagaatgt 42263581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 29681289 - 29681353
Alignment:
Q  37 tgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||    
T  29681289 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaag 29681353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 48366557 - 48366493
Alignment:
Q  37 tgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||| ||||    
T  48366557 tgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcgaaag 48366493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 10187088 - 10187018
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||| ||||||||||||||||||||| || || ||||  ||||||||| ||||||||||||| |||||    
T  10187088 gtctgctacaataacttgatcaagaagatgataaatatgactatgatgaagcgtgcacataaattacaaag 10187018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 43358448 - 43358511
Alignment:
Q  36 ctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaa 99  Q
    ||||||||| |||||||||||||| ||||| ||||  ||||||||| |||||||| ||||||||    
T  43358448 ctgcaataaattgatcaagaagatgatgaagatgactatgatgaagcgtgcacatgaattccaa 43358511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 31286062 - 31285999
Alignment:
Q  187 ccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaat 250  Q
    ||||| ||||||| |||||||| ||| ||||||||| ||||||||| | ||| |||||||||||    
T  31286062 cccttcaggatactttggaatcattgccgtgacttgaacattcatatcaagcttatcgatcaat 31285999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 10917630 - 10917601
Alignment:
Q  201 ttggaatccttgacgtgacttgcacattca 230  Q
    ||||||||||||||||||||||||||||||    
T  10917630 ttggaatccttgacgtgacttgcacattca 10917601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 19310521 - 19310606
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattc 96  Q
    ||||||||  ||||||||  ||||||| ||||||||| |  |||||||| || || ||| | ||||||||| ||||||||||||||    
T  19310521 tgttagaacttgtgttgaaggtctgctacaataacttaactaagaagatgataaagatgtatatgatgaagtgtgcacataaattc 19310606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 34 - 333
Target Start/End: Original strand, 12239457 - 12239757
Alignment:
Q  34 tgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaa 133  Q
    ||||||||||||||||| |||||||| ||||  ||||| ||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| |||| |    
T  12239457 tgctgcaataacttgattaagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcga 12239556  T
Q  134 ttcaccattgcgagttatg-ccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcata 232  Q
    ||| ||    | ||||||| | |||||||||||| ||||| ||  |||||||||||||| |||||||  || |||||||||||||||||||||||||| |    
T  12239557 ttcgcccccaccagttatgtcaaaccggatgcaaaagggt-atgtcggcgaatccccttcaggatacgatgaaatccttgacgtgacttgcacattcaca 12239655  T
Q  233 cctagcgtatcgatcaatgatagtttacagaatgtag--ttatcaatttctctcgtgcactagggaaatgaaagaatgacttaatattattttcggctga 330  Q
    || |||||||||| ||||| |||||| ||||||  ||  || ||||||| ||| ||  ||||| || | |||||||| | ||||||||||||||||| ||    
T  12239656 ccaagcgtatcga-caatggtagtttccagaataaagttttgtcaatttatctagtatactagagataagaaagaataatttaatattattttcggcaga 12239754  T
Q  331 att 333  Q
    |||    
T  12239755 att 12239757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 24870722 - 24870398
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 110  Q
    |||||||| || ||||| | || ||||||||||||||||| |||||||| ||||| ||  |||||||||| | | ||||||||||||| | | ||| |||    
T  24870722 tgttagaacctatgttgggggtttgctgcaataacttgatgaagaagatgatgaagatagacatgatgaataatacacataaattccacatcttgtatgg 24870623  T
Q  111 gatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatcct 210  Q
    || |  |||||||||| |||| |||| ||  | | ||||||||||||||||||||| ||||||     ||| ||||| | |||||||||  ||  ||  |    
T  24870622 gacatgctaacctttaagttcgattcgcccctaccagttatgccaaccggatgcaaaagggta--tgtggcaaatccacattaggatactatgatattat 24870525  T
Q  211 tgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagt--tatcaatttctctcgtgcactagggaaatgaaagaatg 308  Q
    |||||| |||| || ||| | ||| ||||||| |||||||||||||||||| |||  |||  ||||||||| ||||||||||||| |||| |||||| |     
T  24870524 tgacgttactttcatatttacaccaagcgtattgatcaatgatagtttacataataaagttctatcaatttttctcgtgcactagagaaaagaaagactt 24870425  T
Q  309 acttaatattattttcggctgaatttt 335  Q
    | ||| ||||||||| ||| |||||||    
T  24870424 atttagtattatttttggcagaatttt 24870398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 37469182 - 37469067
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 110  Q
    |||||||| |||||||| | || ||| |||||||||||||||||||||| ||||| ||||||||||| ||  ||||||||||||| ||||| ||||||||    
T  37469182 tgttagaacctgtgttgggggtttgcagcaataacttgatcaagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaagtgtgtgtgg 37469083  T
Q  111 gatacactaaccttta 126  Q
    || |||||||||||||    
T  37469082 gacacactaaccttta 37469067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 1840933 - 1840839
Alignment:
Q  29 gagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaaccttta 126  Q
    |||||||||||||||||||||||||| |||| ||||   ||||||||||||| |||| ||||||| || |||| |||||||| |||||||||||||||    
T  1840933 gagtctgctgcaataacttgatcaagtagatgatga---tgaacatgatgaaaagtggacataaaatctaaagtgtgtgtggaatacactaaccttta 1840839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 204 - 352
Target Start/End: Original strand, 34091475 - 34091623
Alignment:
Q  204 gaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagttatc--aatttctctcgtgcactagggaaatga 301  Q
    ||||||||||||||||||||||||||| ||| | |||||  || |||| ||||||||| | |  |||| ||  |||||||||| |||| ||| |||| ||    
T  34091475 gaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggtagtttacaaagtaaagttctctcaatttctctcatgcattagagaaaaga 34091574  T
Q  302 aagaatgacttaatattattttcggctgaattttttgactcacaataatgt 352  Q
    | |||||| ||||||||||||||||| |||  |||||||||| ||||||||    
T  34091575 atgaatgatttaatattattttcggcggaa--ttttgactcataataatgt 34091623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 5437036 - 5436972
Alignment:
Q  37 tgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||    
T  5437036 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaag 5436972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 253
Target Start/End: Original strand, 23757009 - 23757222
Alignment:
Q  38 gcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattca 137  Q
    |||| |||||||  ||||| || ||||| ||||||||||||||||||| ||||||||||| |||  | |||| || | |||||| |||| |||| |||||    
T  23757009 gcaagaacttgactaagaaaatgatgaagatgaacatgatgaagagtgaacataaattccgaagtttatgtgtgacatactaacttttaggttcgattca 23757108  T
Q  138 ccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctag 237  Q
    ||  | | | ||| || |||| ||||||| ||||| |||| ||||||||||||| | ||||   ||| | |||||||||||| | |||||||| ||| |     
T  23757109 cc-ctaccaattaagctaaccagatgcaaaagggt-atactggcgaatccccttcaagataatatgggacccttgacgtgacattcacattcacaccaaa 23757206  T
Q  238 cgtatcgatcaatgat 253  Q
    |||||| |||||||||    
T  23757207 cgtatcaatcaatgat 23757222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 24871475 - 24871398
Alignment:
Q  273 tcaatttctctcgtgcactagggaaatgaaagaatgacttaatattattttcggctgaattttttgactcacaataatgt 352  Q
    |||||| ||||||||||||   |||| || ||||||| ||||||||||||||||| |||  |||||||||||||||||||    
T  24871475 tcaattcctctcgtgcacttaagaaaagagagaatgatttaatattattttcggcagaa--ttttgactcacaataatgt 24871398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 30108187 - 30108251
Alignment:
Q  201 ttggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaat 265  Q
    ||||||||||||| |||| ||||||||||||||  | | |||||||||| ||||||||| |||||    
T  30108187 ttggaatccttgaggtgatttgcacattcatacaaatcttatcgatcaaagatagtttatagaat 30108251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 258
Target Start/End: Complemental strand, 20464275 - 20464054
Alignment:
Q  35 gctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaat 134  Q
    |||||||||||  ||| ||| |||| || ||||| ||| ||||||||| |||| ||||||||||||||| |||| ||||| |||||  |||| |||| ||    
T  20464275 gctgcaataaccagattaaggagatgataaaaat-aacttgatgaagaatgcatataaattccaaagcgcgtgtaggatatactaatttttaggttcgat 20464177  T
Q  135 tcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacc 234  Q
    ||  |    | ||||||| ||| |||||| || | |||| ||||||| |||| | || |  |||  ||  ||||||| ||| |||||||||||||| |||    
T  20464176 tcgtccccactagttatgtcaatcggatgaaaaatggta-taccggcaaatctctttcaaaatattttaaaatccttaacgagacttgcacattcacacc 20464078  T
Q  235 tagcgtatcgatcaatgatagttt 258  Q
     ||| |||||||||||||| ||||    
T  20464077 aagcatatcgatcaatgattgttt 20464054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 34 - 334
Target Start/End: Original strand, 28611983 - 28612281
Alignment:
Q  34 tgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaa 133  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||  |||  |||||||| | ||| ||||||||| |||| |    
T  28611983 tgctgcaataacttgatcaagaagatgatgaatatgaacatgatgaagtgtgcacataaattttaaa--gtgtgtggaacaca-taacctttaggttcga 28612079  T
Q  134 ttcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatac 233  Q
    ||   |    | ||||||| |||| | ||| || | ||| ||| |||||||||||||| || ||||| ||||||||||||||||||||| ||||||| ||    
T  28612080 tttttccccaccagttatgtcaacagtatgtaaaatggt-atatcggcgaatccccttcagaatacaatggaatccttgacgtgacttgtacattcacac 28612178  T
Q  234 ctagcgtatcgatcaatgatagtttacagaatgtagt--tatcaatttctctcgtgcactagggaaatgaaagaatgacttaatattattttcggctgaa 331  Q
    | ||| ||||| |||||| |||| |||| ||    ||  | |||||| | |||||||||||| || | |||||||||| ||| ||| ||||||||| |||    
T  28612179 caagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcactagagataagaaagaatgatttagtataattttcggcagaa 28612278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 309
Target Start/End: Complemental strand, 11932189 - 11931961
Alignment:
Q  81 gagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccgg 180  Q
    ||||||||||||||| |||||| ||||| ||| ||||||||||||| |||  |||| ||    | ||||||||||||||||||||| ||||| ||||| |    
T  11932189 gagtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaaaagggttataccag 11932090  T
Q  181 cgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagt--tatcaatt 278  Q
    |||| |||||| |||||||  || ||||||||| |||||||||  ||||| ||| ||  |||||| ||||| ||||||| |||||  | |  | |||| |    
T  11932089 cgaa-ccccttcaggatacgatgaaatccttgatgtgacttgcttattcacaccaagtttatcga-caatggtagtttatagaataaaattctgtcaaat 11931992  T
Q  279 tctctcgtgcactagggaaatgaaagaatga 309  Q
    |||||||||||||||  ||| ||||||||||    
T  11931991 tctctcgtgcactagataaaagaaagaatga 11931961  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 24075619 - 24075710
Alignment:
Q  11 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagc 102  Q
    |||||||| |||||||  | |||||||||||||||||||| |||||||| || || ||||| ||||  ||| ||||| ||||||||||||||    
T  24075619 tgttagaacctgtgttaggggtctgctgcaataacttgattaagaagatgataaagatgaatatgacaaagtgtgcatataaattccaaagc 24075710  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 21937271 - 21937332
Alignment:
Q  40 aataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    |||||||||| ||||||||| ||||| ||||| ||||||||| ||||||||||||| |||||    
T  21937271 aataacttgaccaagaagatgatgaagatgaatatgatgaagtgtgcacataaattacaaag 21937332  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 24509340 - 24509270
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||||||| ||||||| ||||||||| ||||| ||||  |||||||||  |||| ||||||| |||||    
T  24509340 gtctgctgcaaaaacttgaccaagaagatgatgaagatgagtatgatgaagtttgcaaataaatttcaaag 24509270  T

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Target: scaffold0007 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 333
Target Start/End: Complemental strand, 218017 - 217731
Alignment:
Q  37 tgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattc 136  Q
    |||||||||||||  || ||||| ||||| |||||||| ||||| |||||||||||||||||||  |||||||||| | ||| ||||||| | || ||||    
T  218017 tgcaataacttgacaaaaaagatgatgaagatgaacataatgaatagtgcacataaattccaaa--gtgtgtgggacaaact-acctttaggatcgattc 217921  T
Q  137 accattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcataccta 236  Q
     ||    | || |||||||||| ||| ||| ||||| |||||||||||||         ||||  || ||||||||| | |||||||||||||| ||| |    
T  217920 tcccccaccagctatgccaacctgatacaaaagggt-ataccggcgaatc--------aatacgatgaaatccttgaagagacttgcacattcacaccaa 217830  T
Q  237 gcgtatcgatcaatgatagtttacagaatgtagttat--caatttctctcgtgcactagggaaatgaaagaatgacttaatattattttcggctgaatt 333  Q
    | ||||||||||||| ||||||||| |||   ||| |  |||||||||||||| ||||| |||| |||||||| | |||  |||||||||||| |||||    
T  217829 gtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaaagaattatttagaattattttcggcagaatt 217731  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 716045 - 716123
Alignment:
Q  21 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 101  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||| ||||||| ||||||||| || ||||||||||| ||||    
T  716045 tgtgttgag-gtctgctgcaataacttgaccaagaagatgatg-aaatgaatatgatgaagcgtacacataaattctaaag 716123  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 352
Target Start/End: Original strand, 14218896 - 14219037
Alignment:
Q  211 tgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagttat--caatttctctcgtgcactagggaaatgaaagaatg 308  Q
    |||| |||| || ||||||| ||| | |||||| ||||||||||||||||| |||  |||| |  ||||||  |||||||||||| |||| |||||||||    
T  14218896 tgacttgacatgtacattcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatg 14218995  T
Q  309 acttaatattattttcggctgaattttttgactcacaataatgt 352  Q
    | ||| |||||||||  ||  ||  |||||||||||||||||||    
T  14218996 atttagtattatttttagcataa--ttttgactcacaataatgt 14219037  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 42779867 - 42779937
Alignment:
Q  10 gtgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaag 81  Q
    ||||| |||| ||||||| | ||||||||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  42779867 gtgttggaatttgtgttggg-gtctgctgcaataacttgaccaagaagatgatgaagatgaacataatgaag 42779937  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 34681118 - 34681211
Alignment:
Q  216 tgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtag--ttatcaatttctctcgtgcactagggaaatgaaagaat 307  Q
    ||||||||||||||| | | |||||||||||||||||||||||||  |||  ||  || |||||||||||||| ||| || |||| ||||||||    
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcaccagagaaaagaaagaat 34681211  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 34680975 - 34681039
Alignment:
Q  67 atgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttc 131  Q
    |||||||||||||||| ||||||| ||||  ||||| |||||||| ||||||||| |||| ||||    
T  34680975 atgaacatgatgaagactgcacatgaatttaaaagcatgtgtggggtacactaacttttaggttc 34681039  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 16272134 - 16272184
Alignment:
Q  31 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaag 81  Q
    |||||||||||||||||||  |||||||| || || |||||||||||||||    
T  16272134 gtctgctgcaataacttgactaagaagatgataaagatgaacatgatgaag 16272184  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 38327394 - 38327514
Alignment:
Q  205 aatccttgacgtgacttgcacattcatacctagcgtatcgatcaatgatagtttacagaatgtagttat--caatttctctcgtgcactagggaaatgaa 302  Q
    ||||||||||||||||| |||||||| ||| | || ||||||||||| || |||||| |||  |||| |  ||||||||||| |||| ||| ||||  |     
T  38327394 aatccttgacgtgacttacacattcacaccaaacgcatcgatcaatggtaatttacataataaagttttggcaatttctctc-tgcagtagagaaagtat 38327492  T
Q  303 agaatgacttaatattattttc 324  Q
    ||||||| || |||||||||||    
T  38327493 agaatgatttcatattattttc 38327514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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