View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10378_low_23 (Length: 235)

Name: NF10378_low_23
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10378_low_23
NF10378_low_23
[»] chr6 (12 HSPs)
chr6 (20-217)||(3571730-3571928)
chr6 (123-211)||(8602336-8602424)
chr6 (29-110)||(3568808-3568893)
chr6 (123-211)||(8617312-8617398)
chr6 (137-209)||(8828979-8829051)
chr6 (123-193)||(3568751-3568821)
chr6 (146-211)||(8610265-8610330)
chr6 (138-198)||(8823391-8823451)
chr6 (138-197)||(3563062-3563121)
chr6 (20-108)||(8602413-8602500)
chr6 (75-108)||(8617387-8617420)
chr6 (158-198)||(8602728-8602768)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 3571928 - 3571730
Alignment:
Q  20 tggtgtgtattgcatcaaaaggacaaagaatatttcttttttggctccatggataaaaacacatttatcctaattttatgtcattataccannnnnnn-a 118  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  3571928 tggtgtgtgttgcatcaaatggacaaagaatatttcttttttggctccatggataaaaacacatttatcctaattttatgtcattataccatttttttta 3571829  T
Q  119 ctaaatgtcattataccgtattctacagtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaagctataaccatctaatccacgctct 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3571828 ctaaatgtcattataccatattctacagtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaagctataaccatctaatccacgctct 3571730  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 8602424 - 8602336
Alignment:
Q  123 atgtcattataccgtattctacagtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaagctataaccatctaatcca 211  Q
    |||| |||||||  |||| ||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  8602424 atgttattatactatattatactgtttatgtttggaagcattgcaaaatagacacacaatgatgttggaagctataaccatccaatcca 8602336  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 3568893 - 3568808
Alignment:
Q  29 ttgcatcaaaaggacaaagaatatttcttt----tttggctccatggataaaaacacatttatcctaattttatgtcattatacca 110  Q
    ||||||||||||||||||||||||||||||    |||||||| || |||||||| |||||||||||||  ||||||||||||||||    
T  3568893 ttgcatcaaaaggacaaagaatatttcttttttctttggctcaatagataaaaaaacatttatcctaaaattatgtcattatacca 3568808  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 8617398 - 8617312
Alignment:
Q  123 atgtcattataccgtattctacagtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaagctataaccatctaatcca 211  Q
    ||||||||||||  |||| ||| ||||||||| |||||||| |||||||| |||||  |||||||||||||||||||||||| ||||||    
T  8617398 atgtcattatactatattatactgtttatgttcggaagcaaagcaaaataaacaca--aggatgttggaagctataaccatccaatcca 8617312  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 8828979 - 8829051
Alignment:
Q  137 tattctacagtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaagctataaccatctaatc 209  Q
    |||||||| |||||||||||||||||| | |||||| |||||||||||| || ||||||||||||||| ||||    
T  8828979 tattctactgtttatgtttggaagcaaagaaaaataaacacacaaggatattagaagctataaccatccaatc 8829051  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 3568821 - 3568751
Alignment:
Q  123 atgtcattataccgtattctacagtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaag 193  Q
    ||||||||||||| |||| ||| |||||| ||||||||||||||||||| |||||| |||||||| |||||    
T  3568821 atgtcattataccatattttaccgtttatttttggaagcaatgcaaaatggacacaaaaggatgtgggaag 3568751  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 8610330 - 8610265
Alignment:
Q  146 gtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaagctataaccatctaatcca 211  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||||||| || |||| ||||||    
T  8610330 gtttatgtttggaagcaaagcaaaataaacacacaagaatgttggaagctagaatcatccaatcca 8610265  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 8823391 - 8823451
Alignment:
Q  138 attctacagtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaagctata 198  Q
    |||||||  ||| ||||||||||||| |||||||| ||||||||| ||||||||| |||||    
T  8823391 attctactatttctgtttggaagcaaagcaaaataaacacacaagtatgttggaaactata 8823451  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 3563121 - 3563062
Alignment:
Q  138 attctacagtttatgtttggaagcaatgcaaaatagacacacaaggatgttggaagctat 197  Q
    ||||||| | |||| ||||||||||||||||||||| ||||||  || ||||||||||||    
T  3563121 attctacggattatttttggaagcaatgcaaaatagccacacagtgaagttggaagctat 3563062  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 8602500 - 8602413
Alignment:
Q  20 tggtgtgtattgcatcaaaaggacaaagaatatttcttttttggctccatggataaaaacacatttatcctaa-ttttatgtcattatac 108  Q
    |||||||| || ||||||| |||||||   |||||||||||| |||| |||||| |||||||||||| ||||| |||||||| |||||||    
T  8602500 tggtgtgtgttacatcaaatggacaaaacttatttctttttttgctcaatggat-aaaacacattta-cctaatttttatgttattatac 8602413  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 8617420 - 8617387
Alignment:
Q  75 aaaacacatttatcctaattttatgtcattatac 108  Q
    |||||||||||||| |||||||||||||||||||    
T  8617420 aaaacacatttatcttaattttatgtcattatac 8617387  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 8602768 - 8602728
Alignment:
Q  158 aagcaatgcaaaatagacacacaaggatgttggaagctata 198  Q
    |||||| |||||||| ||||||||||||||||||| |||||    
T  8602768 aagcaaagcaaaataaacacacaaggatgttggaaactata 8602728  T

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