View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_low_24 (Length: 234)
Name: NF10378_low_24
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_low_24 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 23852049 - 23852269
Alignment:
| Q |
14 |
ggccctattcgaattggttcatcgtcttgttttcctacagacaacaatcaaggaaaagatgagaacatcaatgaagcgaagaattcagattcaagagcct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
23852049 |
ggccctattcgaattggttcatcgtcttgttttcctaccgacaacaatcaaggaaaagatgagaacatcaatgaagagaagaattcagattcaagatcct |
23852148 |
T |
|
| Q |
114 |
tttcatgctccttttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852149 |
tttcatgctccttttgtaagaggcaattttctacttctcaagcgttgggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaa |
23852248 |
T |
|
| Q |
214 |
acaaaggtatgatgatggtgt |
234 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23852249 |
acaaaggtatgatgatggtgt |
23852269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 23856616 - 23856835
Alignment:
| Q |
14 |
ggccctattcgaattggttcatcgtcttgttttcctacagacaacaatcaaggaaaagatgagaacatcaatgaagcgaagaattcagattcaagagcct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| | |||||| |||||||||| ||| |
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| T |
23856616 |
ggccctattcgaattggttcatcgtcttgttttcctaatgccaacaatcaaggaaaagatgagaacatcaataaagaggagaatttagattcaagatcct |
23856715 |
T |
|
| Q |
114 |
tttcatgctccttt-tgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacgga |
212 |
Q |
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| T |
23856716 |
tttcatgcttttttgtgtaagagacactattctacttcacaatcgttgggaggacaccagaacgctcataagacggaacatactttagaaaagcaacgca |
23856815 |
T |
|
| Q |
213 |
aacaaaggtatgatgatggt |
232 |
Q |
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||||||| |||||||||||| |
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| T |
23856816 |
aacaaagatatgatgatggt |
23856835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 3157107 - 3156893
Alignment:
| Q |
14 |
ggccctattcgaattggttcatcgtcttgttttcctacagacaacaatcaaggaaaagatgagaacatcaatgaagcgaagaattcagattcaagagcct |
113 |
Q |
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||||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| |||||||| | | |
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| T |
3157107 |
ggccccattcaaattggttcatcgtcttgttttcctaatgataacaatcaaggaaaagatgagaacatcaatgaagagaagaattcggattcaaggtctt |
3157008 |
T |
|
| Q |
114 |
tttcatgctccttttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaa |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3157007 |
tttcatgctccttttgtaagagacaattttctacttcacaagcgttgggaggacaccagaacgctcataaggcggaacgtgctttagaaaagcaacggaa |
3156908 |
T |
|
| Q |
214 |
acaaaggtatgatga |
228 |
Q |
| |
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||||||||||||||| |
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| T |
3156907 |
acaaaggtatgatga |
3156893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 2022730 - 2022926
Alignment:
| Q |
29 |
ggttcatcgtcttgttttcctacagacaacaatcaaggaaaagatgagaacatcaatgaagcgaagaattcagattcaagagccttttcatgctcctttt |
128 |
Q |
| |
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||||| |||||| ||||||||| |||||||| || | ||| | ||||||| | |||||| ||||||||||||||||| | |||||||| | |||| |
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| T |
2022730 |
ggttcctcgtctcgttttcctagtaacaacaatgaaaggaaaaacgagaacaacgatgaagagaagaattcagattcaaagtctttttcatgttgttttt |
2022829 |
T |
|
| Q |
129 |
gtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaacaaaggtatga |
225 |
Q |
| |
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| T |
2022830 |
gcaagagaaaattttctacttcgcaagccttaggaggacaccagaatgcccataaggctgaacgtacgttagaaaaacaacgtaaacaaaggtatga |
2022926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 3139393 - 3139180
Alignment:
| Q |
14 |
ggccctattcgaattggttcatcgtcttgttttcctacagacaacaatcaaggaaaagatgagaacatcaatgaagcgaagaattcagattcaagagcct |
113 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||| |||| ||||||||||||| ||||||| ||||| | |||| ||||| ||||||| || | | || |
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| T |
3139393 |
ggccctattcgagttggttcatcttcttctttacctaataacaacaatcaagggaaagatgcgaacaacggtgaaaagaagacttcagatcca-gtgtct |
3139295 |
T |
|
| Q |
114 |
tt-tcatgctccttttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacgga |
212 |
Q |
| |
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|| | ||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| | |||||||||||||| |
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| T |
3139294 |
ttcttgtgctctttttgcaagagacaattttctacttcacaggcgttgggaggacatcagaacgcacataaggcggaacgggcattagaaaagcaacgtc |
3139195 |
T |
|
| Q |
213 |
aacaaaggtatgatg |
227 |
Q |
| |
|
||||||||||||||| |
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| T |
3139194 |
aacaaaggtatgatg |
3139180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 3167203 - 3167383
Alignment:
| Q |
54 |
acaacaatcaaggaaaagatgagaacatcaatgaagcgaagaattcagattcaagagccttttcatgctccttttgtaagaggcaattttctacttcaca |
153 |
Q |
| |
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|||||||| |||| ||||||||||||| ||||| | ||| ||||||||||||| | |||||||| | ||||| ||||| |||||||||| ||||| |
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| T |
3167203 |
acaacaatgaagggaaagatgagaacaacaatgctgagaacaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcaca |
3167302 |
T |
|
| Q |
154 |
agcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaacaaaggtatgatgatggtgt |
234 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| |||||| | |||||||| ||||| ||||||| |||||| ||||||| |
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|
| T |
3167303 |
agcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaagtatgaaaatggtgt |
3167383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 1744300 - 1744482
Alignment:
| Q |
27 |
ttggttcatcgtcttgttttcctacagacaacaatcaaggaaaagatgagaacatcaatgaagcgaagaattcagattcaagagccttttcatgctcctt |
126 |
Q |
| |
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|||||||||| ||||||||||| | |||||||| ||||||| |||||||||| | ||||| ||| || |||||||| | |||||||||| || |
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|
| T |
1744300 |
ttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagaaaaaaatggattcaaggtctttttcatgcttatt |
1744399 |
T |
|
| Q |
127 |
ttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaac |
209 |
Q |
| |
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||| ||| | ||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| | ||| ||||||||| |
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| T |
1744400 |
ttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataagacggaacgtgcattacaaaagcaac |
1744482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 1738957 - 1739155
Alignment:
| Q |
27 |
ttggttcatcgtcttgttttcctacagacaacaatcaaggaaaagatgagaacatcaatgaagcgaagaattcagattcaagagccttttcatgctcctt |
126 |
Q |
| |
|
|||||||||| ||| ||||||| | |||||||| |||| ||||||||||||| ||||| | ||| || |||||||| | |||||||||| || |
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| T |
1738957 |
ttggttcatcatctcgttttccaaataacaacaataaagggaaagatgagaacaagaatgaggagaaaaaaatggattcaaggactttttcatgcttatt |
1739056 |
T |
|
| Q |
127 |
ttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaacaaaggtatga |
225 |
Q |
| |
|
||| ||| | ||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||| | || ||||||||| |||||||||||||| |
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|
| T |
1739057 |
ttgcaagggaaaattttctacttcgcaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcgttgcaaaagcaacttaaacaaaggtatga |
1739155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 1724454 - 1724567
Alignment:
| Q |
113 |
ttttcatgctccttttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacgga |
212 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||| ||||||||||| ||||| || ||||||||||| |||||| | ||| |||||||||| | |
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|
| T |
1724454 |
ttttcatgcttattttgcaagagaaaattttctacttcacaggcgttaggagggcaccaaaatgctcataaggcagaacgtgcattaaaaaagcaacgta |
1724553 |
T |
|
| Q |
213 |
aacaaaggtatgat |
226 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
1724554 |
aactaaggtatgat |
1724567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 1763566 - 1763480
Alignment:
| Q |
140 |
ttttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaacaaaggtatgat |
226 |
Q |
| |
|
|||||||||||||| |||||||||| || || || |||||||||||||||| | | |||||||||||||| ||||||||||||||| |
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|
| T |
1763566 |
ttttctacttcacatacgttaggagggcatcaaaaagctcataaggcggaacatgcattagaaaagcaacgtaaacaaaggtatgat |
1763480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 1760106 - 1760203
Alignment:
| Q |
125 |
ttttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaacaaaggta |
222 |
Q |
| |
|
||||| ||||| ||||| |||||||||| ||||| ||||| ||||| || ||| |||||||||||||| | |||||||||||||| ||||||||||| |
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|
| T |
1760106 |
ttttgcaagagaaaatttactacttcacaggcgttgggagggcaccaaaatgcttataaggcggaacgtgcattagaaaagcaacgtaaacaaaggta |
1760203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 7491298 - 7491182
Alignment:
| Q |
117 |
catgctccttttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaaca |
216 |
Q |
| |
|
||||||| | ||| ||| ||||||||||||||| |||| |||||||| || || || || ||||||||||||||| | || ||||| ||||| ||| | |
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| T |
7491298 |
catgctcgtattgcaaggggcaattttctactttccaaggcttaggagggcatcaaaatgcccataaggcggaacgtgcgttggaaaaacaacgtaaaga |
7491199 |
T |
|
| Q |
217 |
aaggtatgatgatggtg |
233 |
Q |
| |
|
||||||||||| ||||| |
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| T |
7491198 |
aaggtatgatgctggtg |
7491182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 7499019 - 7498903
Alignment:
| Q |
117 |
catgctccttttgtaagaggcaattttctacttcacaagcgttaggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaaca |
216 |
Q |
| |
|
||||||| | ||| ||| ||||||||||||||| |||| |||||||| || || || || |||||||| |||||| | || ||||| |||| ||| | |
|
|
| T |
7499019 |
catgctcgtattgcaaggggcaattttctactttccaaggcttaggagggcatcaaaatgcccataaggcagaacgtgcattggaaaaacaactaaaaga |
7498920 |
T |
|
| Q |
217 |
aaggtatgatgatggtg |
233 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
7498919 |
aaggtatgatgctggtg |
7498903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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