View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_low_25 (Length: 220)
Name: NF10378_low_25
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_low_25 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 23076819 - 23076942
Alignment:
| Q |
97 |
ctaagttaaaattgtcctgctttaactaacacaactaccatgtaacttccttaatacttttcccaatttgaagacgatggtataaatattaaagatatat |
196 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23076819 |
ctaagttaaaattgtcctgctctaactaacacaactaccatgtaacttgcctaatacttttcccaatttgaagacgatggtataaatattaaagatatat |
23076918 |
T |
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| Q |
197 |
tgtaagatataatttttgtctacc |
220 |
Q |
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|||||||| ||||||||||||||| |
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| T |
23076919 |
tgtaagatttaatttttgtctacc |
23076942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 23076577 - 23076671
Alignment:
| Q |
1 |
atgcgccgggtaaaagtgttgtgtattggctagttgaatcctctcggtctagatagggtctaagtcattcagtcattcctcaaaggactttctat |
95 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23076577 |
atgcgtcgggtaaaagtgttgtgtattggctagttgaatcctctcggtctagatagggtctaagtctttcagtcattcctcaaaggactttctat |
23076671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 23076479 - 23076518
Alignment:
| Q |
20 |
tgtgtattggctagttgaatcctctcggtctagatagggt |
59 |
Q |
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| T |
23076479 |
tgtgtattggctagttgaatcctctcggtctagatagggt |
23076518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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