View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10378_low_26 (Length: 216)

Name: NF10378_low_26
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10378_low_26
NF10378_low_26
[»] chr8 (6 HSPs)
chr8 (17-200)||(26951699-26951882)
chr8 (25-200)||(21276654-21276829)
chr8 (17-200)||(18178792-18178974)
chr8 (24-157)||(33324422-33324554)
chr8 (85-197)||(9809043-9809155)
chr8 (61-187)||(11911668-11911794)
[»] scaffold0010 (1 HSPs)
scaffold0010 (17-200)||(255624-255807)
[»] chr4 (5 HSPs)
chr4 (17-200)||(23059600-23059783)
chr4 (98-197)||(9631963-9632062)
chr4 (28-184)||(37836680-37836836)
chr4 (34-141)||(35096687-35096794)
chr4 (61-197)||(17283824-17283959)
[»] chr7 (6 HSPs)
chr7 (17-200)||(12129178-12129361)
chr7 (62-197)||(10325370-10325505)
chr7 (98-194)||(20492156-20492253)
chr7 (17-84)||(9451244-9451312)
chr7 (145-197)||(36677297-36677349)
chr7 (92-175)||(31957330-31957413)
[»] chr3 (6 HSPs)
chr3 (17-200)||(26731130-26731313)
chr3 (17-200)||(47703994-47704177)
chr3 (17-173)||(1017885-1018041)
chr3 (28-198)||(10346753-10346923)
chr3 (145-197)||(20916090-20916142)
chr3 (145-197)||(20925052-20925104)
[»] chr2 (3 HSPs)
chr2 (17-200)||(28590211-28590394)
chr2 (17-126)||(41316124-41316233)
chr2 (24-198)||(10977428-10977602)
[»] chr5 (6 HSPs)
chr5 (17-200)||(24274911-24275094)
chr5 (17-200)||(24387119-24387302)
chr5 (17-158)||(30304532-30304673)
chr5 (17-198)||(24870101-24870282)
chr5 (86-195)||(8703810-8703919)
chr5 (141-173)||(7211851-7211883)
[»] chr1 (8 HSPs)
chr1 (17-200)||(27877370-27877553)
chr1 (19-200)||(10395618-10395801)
chr1 (40-195)||(17321549-17321704)
chr1 (29-198)||(12538768-12538937)
chr1 (92-177)||(39287359-39287444)
chr1 (120-197)||(3601582-3601659)
chr1 (38-160)||(32544613-32544735)
chr1 (98-154)||(2114071-2114127)
[»] chr6 (3 HSPs)
chr6 (16-198)||(13104626-13104808)
chr6 (40-200)||(32895688-32895846)
chr6 (37-198)||(27862351-27862511)
[»] scaffold0151 (1 HSPs)
scaffold0151 (25-182)||(21557-21714)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 26951699 - 26951882
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26951699 tgtgtagtccaacagcttcccccacctctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 26951798  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
26951799 gcccaacccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccggtttcttccaaac 26951882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 21276654 - 21276829
Alignment:
25 ccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaac 124  Q
    |||||| | |||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||| |    
21276654 ccaacaacctcccccacatctatatcacaaagagggtcaaaccattctgttcttgcaagaacaaaaccaccatcctcatccctaagatacatgcccaagc 21276753  T
125 caaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
21276754 caacccagttaagagaagtggaaaaggatgcatcaatattgcatttgtacctgccaggtgccggtttcttccaaac 21276829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 18178974 - 18178792
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    |||| ||||||||||| ||||| ||||||||||||||||  || |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
18178974 tgtgcagtccaacagcctcccc-acatctatatcacaaagtggagcaaaccattttgttcttgcaagaacaaaagcaccatcaacatccctaagacacat 18178876  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    ||| |||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||    
18178875 gcctaaaccaaccctgttaagaaaagtggaaaaggatgcatcaatattgcatttgtaccttccaggtgccggtttcttccaaac 18178792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 33324554 - 33324422
Alignment:
24 tccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaa 123  Q
    |||||| || || ||||| |||| |||||||| ||||  ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || |      
33324554 tccaaccgcctctcccacctctacatcacaaagagggt-aaaccattccgttcttgcaagaacaaatgcaccatcatcatccctaagacacataccgagt 33324456  T
124 ccaaccctgttaagagaagtagaaaaggatgcat 157  Q
    |||||||||||| ||||||| |||||||||||||    
33324455 ccaaccctgttatgagaagtggaaaaggatgcat 33324422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 9809043 - 9809155
Alignment:
85 acaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtg 184  Q
    |||||| ||||  ||||||| |||||| |||| |||||||| | | | |||||||| ||||||||||| || ||||| || ||||||||||| |||| ||    
9809043 acaaaatcacctgcatcatctctaagatacattcccaaacctatcatattaagagaggtagaaaaggacgcgtcaatattacatttatacctaccagatg 9809142  T
185 ccgatttcttcca 197  Q
    ||| |||||||||    
9809143 ccggtttcttcca 9809155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 11911668 - 11911794
Alignment:
61 gcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaa 160  Q
    |||||||| ||||||  |||||| |||||| |||||  || ||| ||||||||||| | ||| || ||| | ||||| ||||  |||||||| |||||||    
11911668 gcaaaccaatctgtttgtgcaaggacaaaatcaccagtattatctctaagacacattctcaacccgaccttattaagtgaagaggaaaaggaggcatcaa 11911767  T
161 tgttgcatttatacctgccaggtgccg 187  Q
    ||||| |||||  ||| ||||||||||    
11911768 tgttgtatttactcctaccaggtgccg 11911794  T

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Target: scaffold0010 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 255624 - 255807
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
255624 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattacgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 255723  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
255724 gcccaaaccaaccctgttaaaagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccggtttcttccaaac 255807  T

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Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 23059600 - 23059783
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23059600 tgtgtagcccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 23059699  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
23059700 gcccaacccaaccttgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccggtttcttccaaac 23059783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 9631963 - 9632062
Alignment:
98 catcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttcca 197  Q
    ||||||| ||||||||||| || ||||  ||||| |||||||| |||||||||||||||||||| || ||||||||||| |||| ||||| |||||||||    
9631963 catcatctctaagacacattccaaaacataccctattaagagaggtagaaaaggatgcatcaatattacatttataccttccagatgccggtttcttcca 9632062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 37836680 - 37836836
Alignment:
28 acagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaa 127  Q
    ||||| |||||| |||||||||||||   ||| ||||||||   |||| ||||||| |||||| || || ||||||| | ||||||||| |||||||| |    
37836680 acagcctcccccgcatctatatcacacgaaggagcaaaccagattgtttttgcaagaacaaaatcatcagcatcatctccaagacacattcccaaaccga 37836779  T
128 ccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtg 184  Q
    || | |||||||| ||  |||||||||| |||||||| ||||||||| || ||||||    
37836780 ccttattaagagatgtgaaaaaggatgcgtcaatgttacatttatacatgtcaggtg 37836836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 35096794 - 35096687
Alignment:
34 tcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgt 133  Q
    ||||| |||||||||||||| | ||| ||||||||||| ||  ||||||| |||||| ||||| ||||||| ||||||||||| ||||| ||||| || |    
35096794 tcccctacatctatatcacacaaaggagcaaaccattccgtctttgcaagaacaaaaacaccaacatcatctctaagacacatacccaatccaactctat 35096695  T
134 taagagaa 141  Q
    ||||||||    
35096694 taagagaa 35096687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 17283824 - 17283959
Alignment:
61 gcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaa 160  Q
    |||||| | |||||| | ||||| |||||| ||||  ||||||| ||||||||||   ||||||| || || || ||||| |||||||||||||| | ||    
17283824 gcaaacgaatctgttttggcaagaacaaaatcacctgcatcatctctaagacacaataccaaacctactctattgagagaggtagaaaaggatgcgtaaa 17283923  T
161 tgttgcatttatacctgccaggtgccgatttcttcca 197  Q
    | || |||||||| ||||||| ||| | |||||||||    
17283924 tattacatttata-ctgccagatgctggtttcttcca 17283959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 12129361 - 12129178
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
12129361 tgtgtagtccaacagcttcccccacatctataacacaaatagggacaaaccattatgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 12129262  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
12129261 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgtcggtttctttcaaac 12129178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 10325370 - 10325505
Alignment:
62 caaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaat 161  Q
    ||||||| ||| || |||||||  ||||| |||||  |||||| ||||| ||||| ||||||| |||||| |||||||| || |||||||||||||||||    
10325370 caaaccagtctttttttgcaagagcaaaatcaccagaatcatctctaaggcacattcccaaacgaaccctattaagagaggtggaaaaggatgcatcaat 10325469  T
162 gttgcatttatacctgccaggtgccgatttcttcca 197  Q
    ||| ||||| |||||||||  |||||||||||||||    
10325470 gttacatttgtacctgccatttgccgatttcttcca 10325505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 20492253 - 20492156
Alignment:
98 catcatccctaagacacatgcccaaaccaaccctgttaagagaagtag-aaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttctt 194  Q
    ||||||| ||||||||||| |||||||| ||||| |||||||| |||| ||||  |||| ||||| || ||||||||||| || | ||||| ||||||    
20492253 catcatctctaagacacattcccaaacctaccctattaagagaggtagaaaaaaaatgcgtcaatattacatttatacctccctgatgccggtttctt 20492156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 9451312 - 9451244
Alignment:
17 tgtgtagtccaacagcttccc-ccacatctatatcacaaataggggcaaaccattctgttcttgcaagt 84  Q
    |||||| || |||||| |||| |||||||||||||| ||| ||||||||||||||  ||||||||||||    
9451312 tgtgtaatcgaacagcctccctccacatctatatcataaagaggggcaaaccatttcgttcttgcaagt 9451244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 36677349 - 36677297
Alignment:
145 gaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttcca 197  Q
    ||||||||  |||||||||||||||||||||||||| ||| || |||||||||    
36677349 gaaaaggagacatcaatgttgcatttatacctgccatgtgtcggtttcttcca 36677297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 31957330 - 31957413
Alignment:
92 caccatcatcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacc 175  Q
    ||||| |||||| ||||| |||||| ||||| || ||| ||||||| || | ||| ||||| ||||||||||| ||||||||||    
31957330 caccagcatcattcctaatacacattcccaagcctaccttgttaagtgatggagagaaggaggcatcaatgttacatttatacc 31957413  T

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Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 26731130 - 26731313
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
26731130 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattatgttcttgcaagtacaaaaacaccatcatcatccctaagacacat 26731229  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
26731230 gcccaaaccaaccctgttaggagaaatagaaaatgatgcatcaatgttgcatttatacctgccaggtgccggtttcttccaaac 26731313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 47703994 - 47704177
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
47703994 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgctcttgcaagtacaaaagcaccattatcatccctaagacacat 47704093  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||||| |||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
47704094 gcccaacccaaccatgttaagagaagtaaagaaggatgcatctatgttgcatttatacctgccaggtgccggtttcttccaaac 47704177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 1017885 - 1018041
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||    
1017885 tgtgtagtcccacagcttcccccacatctatatcacaaataggggcaaactattttgttcttgcaagtacaaaagcaccatcatcatccctaagacgcat 1017984  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttata 173  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
1017985 gcccaaaccaaccttgttaagagaagtagaaaaggatgcatcaatgttgcatttata 1018041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 10346753 - 10346923
Alignment:
28 acagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaa 127  Q
    ||||| ||||| |||||||||||||| | ||| ||||||||||| ||  ||||||| |||||| ||||| ||||||| |||||||||||||||||||||     
10346753 acagcctcccctacatctatatcacagagaggagcaaaccattccgtctttgcaagaacaaaaacaccaacatcatctctaagacacatgcccaaaccag 10346852  T
128 ccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaa 198  Q
    || | |||||| |||| ||||| |||||||| ||||||||||||||||||||  |||||| ||| ||||||    
10346853 ccatattaagataagtggaaaaagatgcatctatgttgcatttatacctgccttgtgccggttttttccaa 10346923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 20916142 - 20916090
Alignment:
145 gaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttcca 197  Q
    |||||||||||||||||||| ||||| ||||||||| | |||| |||||||||    
20916142 gaaaaggatgcatcaatgttacatttgtacctgccaagcgccggtttcttcca 20916090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 20925104 - 20925052
Alignment:
145 gaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttcca 197  Q
    |||||||||||||||||||| ||||| ||||||||| | |||| |||||||||    
20925104 gaaaaggatgcatcaatgttacatttgtacctgccaagcgccggtttcttcca 20925052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 28590211 - 28590394
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
28590211 tgtgtagtccaacagcttcccccgcatctatatcacaaatatgggcaaaccattttgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 28590310  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
28590311 gcccaacccaaccctgttaagagaagtagagaaggatgcatctatgttgcatttatacctgccaggtgccggtttcttccaaac 28590394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 41316124 - 41316233
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41316124 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 41316223  T
117 gcccaaacca 126  Q
    ||||||||||    
41316224 gcccaaacca 41316233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 10977602 - 10977428
Alignment:
24 tccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaa 123  Q
    |||||| || || |||||||||| |||||||| ||||| |||||||  |||||||||||| ||||| |||||||||||||||||||||||||| || |      
10977602 tccaaccgcctctcccacatctacatcacaaagaggggaaaaccatcatgttcttgcaagaacaaacgcaccatcatcatccctaagacacataccgagt 10977503  T
124 ccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaa 198  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||  |||||||||    
10977502 ccaaccctgttaagagaagtggaaaatgatgcatcaatgttgcatttatacctgccagatgccggcttcttccaa 10977428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 24275094 - 24274911
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
24275094 tgtgtagtccaacagcttcccccacacctatatcacaaataggggcaaaccattatgttcttgcaagtacagaagcaccatcatcatccctaagacacat 24274995  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||    
24274994 gtccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgctgcatttatatctgccagatgccggtttcttccaaac 24274911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 24387119 - 24387302
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
24387119 tgtgtagtccaacagcttcccccacacctatatcacaaataggggcaaaccattatgttcttgcaagtacagaagcaccatcatcatccctaagacacat 24387218  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||    
24387219 gtccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgctgcatttatatctgccagatgccggtttcttccaaac 24387302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 30304673 - 30304532
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
30304673 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcgccatcatcatccctaagacacat 30304574  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatc 158  Q
    |||||| |||||||||||||||||||||||||||||||||||    
30304573 gcccaacccaaccctgttaagagaagtagaaaaggatgcatc 30304532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 24870282 - 24870101
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||| ||||||  ||||||||||||||||  ||||||    
24870282 tgtgtagtccaacagcctcccccaaatctatatcacaaagaggggcaaaccattctgttcttacaagaacaaaaataccatcatcatccctataacacat 24870183  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaa 198  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
24870182 gcccaaaccaaccttgttaagagaagtggaaaatgatgcatcaatgttgcatttatacctgccaagtgccggtttcttccaa 24870101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 8703810 - 8703919
Alignment:
86 caaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgc 185  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||||    
8703810 caaaagcaccatcgtcatccctaaggcacatgcccagaccaaccctctgaagagaagcagaaaaagatgcatcaatgttgcatttatacctgccaggtgc 8703909  T
186 cgatttcttc 195  Q
    || |||||||    
8703910 cggtttcttc 8703919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 7211851 - 7211883
Alignment:
141 agtagaaaaggatgcatcaatgttgcatttata 173  Q
    ||||||||||||||||||||| |||||||||||    
7211851 agtagaaaaggatgcatcaatattgcatttata 7211883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 27877553 - 27877370
Alignment:
17 tgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacat 116  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
27877553 tgtgtagaccaacagcctcccccacatctatatcacaaagaggggcaaaccattctgttcttgcaagcacaaaagcatcatcctcatccctaagacacat 27877454  T
117 gcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||||| |||||  |||||| |||||| ||||||||||||||||| |||||||| || ||||||||||| | ||||||||||||    
27877453 gcccaagccaactatgttaaaagaagttgaaaaggatgcatcaatattgcatttgtatctgccaggtgctggtttcttccaaac 27877370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 10395618 - 10395801
Alignment:
19 tgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgc 118  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||    
10395618 tgtagcccaacagtttcccccacatctatatcacaaagaggggcaaactattttgttcttacaagaacaaaagcaccatcatcatccctaagacacatgc 10395717  T
119 ccaaacc--aaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    ||||| |  |||||||||||||||||| |||||||| |||||||||||||||||||||| |  |||||||| ||||||||||||    
10395718 ccaaagcaaaaccctgttaagagaagtggaaaaggaagcatcaatgttgcatttatacccgttaggtgccggtttcttccaaac 10395801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 40 - 195
Target Start/End: Complemental strand, 17321704 - 17321549
Alignment:
40 acatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaagag 139  Q
    |||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
17321704 acatctatatcacaaagaggggcaaaccattttgttcttgtaagaacaaaagcaccatcatcatccctaagacacatgcccagaccaaccctattaagag 17321605  T
140 aagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttc 195  Q
    |||  ||||| |||||||||||||||||||||||||||||| ||| || |||||||    
17321604 aagcggaaaatgatgcatcaatgttgcatttatacctgccatgtgtcggtttcttc 17321549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 12538937 - 12538768
Alignment:
29 cagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaac 128  Q
    |||| |||||||| |||||||  |||| ||| |||||| |||  |||||| |||| |||||||||| ||| ||||||||||| |||||||||| ||||||    
12538937 cagcctcccccacgtctatattgcaaagaggagcaaacaatttcgttcttacaagaacaaaagcacaatcgtcatccctaaggcacatgcccagaccaac 12538838  T
129 cctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaa 198  Q
    || |||||||||||  ||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||    
12538837 ccagttaagagaagaggaaaatgatgcatcagtgttgcatttatacctatcaggtgccgatttcttccaa 12538768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 39287444 - 39287359
Alignment:
92 caccatcatcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctg 177  Q
    ||||||||||||  | ||||||||| |||||||||||||| |||||||| || ||||||||||||| ||| || ||||| ||||||    
39287444 caccatcatcatttccaagacacattcccaaaccaaccctattaagagaggtggaaaaggatgcataaattttacatttgtacctg 39287359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 3601582 - 3601659
Alignment:
120 caaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttcca 197  Q
    |||||| ||||| |||||||| ||||| || ||||  ||||| || |||||||||||||||| ||||| |||||||||    
3601582 caaacctaccctattaagagaggtagagaaagatgtgtcaatattacatttatacctgccagatgccggtttcttcca 3601659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 32544613 - 32544735
Alignment:
38 ccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaag 137  Q
    |||||||||| ||||| |  || |||||||| |||||| | ||||| |||||| || |  |||  || ||| | ||||| || ||||| ||||| |||||    
32544613 ccacatctatgtcacacaagggagcaaaccagtctgttttggcaagaacaaaatcatctgcatagtctctagggcacattcctaaacctaccctattaag 32544712  T
138 agaagtagaaaaggatgcatcaa 160  Q
    ||| |||||||||||||||||||    
32544713 agaggtagaaaaggatgcatcaa 32544735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 2114127 - 2114071
Alignment:
98 catcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatg 154  Q
    |||||||  |||||||||| |||||||| ||| | |||||||| |||||||||||||    
2114127 catcatctttaagacacattcccaaacctaccatattaagagaggtagaaaaggatg 2114071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 13104626 - 13104808
Alignment:
16 ctgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacaca 115  Q
    |||||||||||| || | ||||| |||||||||||||||| | ||| ||| |||| |||||||||||| ||||||||||||||||| ||| ||| |||||    
13104626 ctgtgtagtccatcaacgtccccgacatctatatcacaaagacgggtaaatcattatgttcttgcaagaacaaaagcaccatcatcttccgtaatacaca 13104725  T
116 tgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaa 198  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
13104726 tgcccaaaccaaccttgttaagagaagtgaaaaaggatgcatcaatgttgcatttatacctgctaggtgccggtttcttccaa 13104808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 32895846 - 32895688
Alignment:
40 acatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaagag 139  Q
    |||||||||||||| |  ||| ||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
32895846 acatctatatcacaga--gggacaaaccattatgttattgcaagcacaaaagcaccatcctcatccctaagacacatgcccaagccaactctgttaagag 32895749  T
140 aagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaaac 200  Q
    |||| ||||||||||||||||| |||||||| || ||||||||||| | ||||||||||||    
32895748 aagttgaaaaggatgcatcaatattgcatttgtaactgccaggtgctggtttcttccaaac 32895688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 198
Target Start/End: Original strand, 27862351 - 27862511
Alignment:
37 cccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaa 136  Q
    ||||| |||| ||| |||| |||||||||| |||| ||||||||||| ||||| | |||| ||||||||||| | ||||| ||||  |||||| || |||    
27862351 cccacctctacatcgcaaagaggggcaaactattccgttcttgcaagaacaaatgtaccaccatcatccctagg-cacatacccagtccaaccatgctaa 27862449  T
137 gagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtgccgatttcttccaa 198  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||||||||    
27862450 gagaagtggaaaaagatgcatcaatgttgcatttatacctgccaggcgccaacttcttccaa 27862511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 21557 - 21714
Alignment:
25 ccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgcaagtacaaaagcaccatcatcatccctaagacacatgcccaaac 124  Q
    |||||||| ||||| || ||||| ||||||| |||||| |||||||| ||| ||||||| |||||  ||||| ||||||| | ||||||||| |||||||    
21557 ccaacagcctcccctacgtctatgtcacaaagaggggcgaaccattccgtttttgcaagaacaaagacaccagcatcatctcgaagacacatacccaaac 21656  T
125 caaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccagg 182  Q
    || |||||||||||  ||| ||||| ||||||||||||||||||||||||||| ||||    
21657 cacccctgttaagattagtggaaaaagatgcatcaatgttgcatttatacctgtcagg 21714  T

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