View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_low_27 (Length: 213)
Name: NF10378_low_27
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 13396898 - 13397078
Alignment:
| Q |
17 |
ctttcttcgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaac |
116 |
Q |
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| T |
13396898 |
ctttctccgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaac |
13396997 |
T |
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| Q |
117 |
acagttgatgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttctt |
197 |
Q |
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| T |
13396998 |
acgagtgatgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttctt |
13397078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 19944575 - 19944402
Alignment:
| Q |
24 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
123 |
Q |
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| T |
19944575 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttg |
19944476 |
T |
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| Q |
124 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttctt |
197 |
Q |
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| T |
19944475 |
atgtactccgcttgagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttctt |
19944402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 31622651 - 31622739
Alignment:
| Q |
94 |
cccatgttgaatatttgcaaaacacagttgatgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcata |
183 |
Q |
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| T |
31622651 |
cccatgttgaatctt-gcaaaacatggttgatgcactctgcttgagataactgcaaaactcctttatgcctatctcacatgatttgcata |
31622739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 6692625 - 6692452
Alignment:
| Q |
24 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
123 |
Q |
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| T |
6692625 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaactagtttggcatcgcccatattgaatctttgcaaaacacggttg |
6692526 |
T |
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| Q |
124 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttctt |
197 |
Q |
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| T |
6692525 |
atgtactccgcttgagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttctt |
6692452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 796196 - 796369
Alignment:
| Q |
24 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
123 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| |||||| ||||||||||||| |||||||||||| |||| |
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| T |
796196 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttg |
796295 |
T |
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| Q |
124 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttctt |
197 |
Q |
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| T |
796296 |
atgtactccgcttaagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttctt |
796369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 8273583 - 8273458
Alignment:
| Q |
72 |
tgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttgatgtactctacttgagataactacaaaactcctttttgcttatctatc |
171 |
Q |
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| T |
8273583 |
tgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttgatgtactccgcttgagataactgcaaaacacctttttgcttatctctc |
8273484 |
T |
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| Q |
172 |
atgatttgcataccaatgattttctt |
197 |
Q |
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| T |
8273483 |
gtgatttgcataccaaggattttctt |
8273458 |
T |
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