View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10378_low_29 (Length: 204)

Name: NF10378_low_29
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10378_low_29
NF10378_low_29
[»] chr4 (6 HSPs)
chr4 (55-197)||(51293021-51293172)
chr4 (98-138)||(17044132-17044172)
chr4 (98-138)||(37605703-37605743)
chr4 (98-138)||(25164483-25164523)
chr4 (98-138)||(45995907-45995947)
chr4 (98-138)||(55281338-55281378)
[»] chr7 (5 HSPs)
chr7 (98-138)||(33496629-33496669)
chr7 (98-138)||(46576254-46576294)
chr7 (96-138)||(52065-52107)
chr7 (98-130)||(30922730-30922762)
chr7 (98-138)||(48460782-48460822)
[»] chr8 (1 HSPs)
chr8 (98-138)||(14342199-14342239)
[»] chr5 (3 HSPs)
chr5 (98-138)||(11247322-11247362)
chr5 (98-138)||(13988377-13988417)
chr5 (101-138)||(36890509-36890546)
[»] chr2 (6 HSPs)
chr2 (98-138)||(13696977-13697017)
chr2 (98-138)||(14242536-14242576)
chr2 (98-138)||(17823709-17823749)
chr2 (98-138)||(32599260-32599300)
chr2 (98-138)||(33555374-33555414)
chr2 (98-138)||(36272673-36272713)
[»] chr1 (5 HSPs)
chr1 (98-138)||(1995082-1995122)
chr1 (98-138)||(27325639-27325679)
chr1 (98-138)||(2402937-2402977)
chr1 (98-138)||(32267477-32267517)
chr1 (98-138)||(40030916-40030956)
[»] scaffold0933 (1 HSPs)
scaffold0933 (98-133)||(3073-3108)
[»] chr6 (3 HSPs)
chr6 (98-138)||(9045962-9046002)
chr6 (100-128)||(32720491-32720519)
chr6 (98-138)||(34792663-34792703)
[»] chr3 (1 HSPs)
chr3 (102-138)||(48034820-48034856)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 51293172 - 51293021
Alignment:
Q  55 gaatctttgacctatatataatccatgcataacattaagtaatatggagtggtataatgtgtgtatggaaaaaagtgtgaacat----------cctata 144  Q
    |||||||||||||||||||||||||||||||||||| |||||     ||||||| |||||||||||| ||||||||||| ||||          ||||||    
T  51293172 gaatctttgacctatatataatccatgcataacattcagtaa-----agtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcctata 51293078  T
Q  145 tataatt----cgtgcataggatttattgaattctttgcattttacttttacctttg 197  Q
    |||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  51293077 tataattaattcgtgcataggatttattgaattctttgcattttacttttacctttg 51293021  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 17044132 - 17044172
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  17044132 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 17044172  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 37605743 - 37605703
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  37605743 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 37605703  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 25164523 - 25164483
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  25164523 atggagtggtacaatgtgtgtatgcaaaaaagtgtgtacat 25164483  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 45995947 - 45995907
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| ||||||||||||||||||| |||| ||||    
T  45995947 atggagtggtacaatgtgtgtatggaaaaaaatgtgtacat 45995907  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 55281338 - 55281378
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  55281338 atggagtggtacaatgtatgtatggaaaaaagtgtgtacat 55281378  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 33496629 - 33496669
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  33496629 atggagtggtataatgtgtgtatggaaaaaagtgtgtacat 33496669  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 46576294 - 46576254
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  46576294 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 46576254  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 52065 - 52107
Alignment:
Q  96 atatggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  52065 atatgtagtggtacaatgtgtgtatggaaaaaagtgtgtacat 52107  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 30922762 - 30922730
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagt 130  Q
    ||||||||||| |||||||||||||||||||||    
T  30922762 atggagtggtacaatgtgtgtatggaaaaaagt 30922730  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 48460782 - 48460822
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| ||||||||| |||||||||||||| ||||    
T  48460782 atggagtggtacaatgtgtgtgtggaaaaaagtgtgtacat 48460822  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 14342239 - 14342199
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  14342239 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 14342199  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 11247322 - 11247362
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  11247322 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 11247362  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 13988377 - 13988417
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  13988377 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 13988417  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 36890509 - 36890546
Alignment:
Q  101 gagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  36890509 gagtggtacaatgtgtgtatggaaaaaagtgtgtacat 36890546  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 13697017 - 13696977
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  13697017 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 13696977  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 14242576 - 14242536
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  14242576 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 14242536  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 17823709 - 17823749
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  17823709 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 17823749  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 32599300 - 32599260
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  32599300 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 32599260  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 33555414 - 33555374
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  33555414 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 33555374  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 36272713 - 36272673
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| ||||||| |||||||||||||||| ||||    
T  36272713 atggagtggtacaatgtgtatatggaaaaaagtgtgtacat 36272673  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 1995082 - 1995122
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  1995082 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 1995122  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 27325679 - 27325639
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  27325679 atggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 27325639  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 2402977 - 2402937
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||| ||||| |||||||||||||||||||||||| ||||    
T  2402977 atggaatggtacaatgtgtgtatggaaaaaagtgtgtacat 2402937  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 32267517 - 32267477
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||| ||| |||||||||||||||||||||||| ||||    
T  32267517 atggagtagtacaatgtgtgtatggaaaaaagtgtgtacat 32267477  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 40030916 - 40030956
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  40030916 atggagtggtacaatgtgtgtatgaaaaaaagtgtgtacat 40030956  T

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Target: scaffold0933 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 3108 - 3073
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtg 133  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3108 atggagtggtacaatgtgtgtatggaaaaaagtgtg 3073  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 9045962 - 9046002
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  9045962 atggagtggtacaatgtgtgtatgaaaaaaagtgtgtacat 9046002  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 32720491 - 32720519
Alignment:
Q  100 ggagtggtataatgtgtgtatggaaaaaa 128  Q
    |||||||||||||||||||||||||||||    
T  32720491 ggagtggtataatgtgtgtatggaaaaaa 32720519  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 34792703 - 34792663
Alignment:
Q  98 atggagtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  34792703 atggagtggtacaatgtgtgtatgcaaaaaagtgtgtacat 34792663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 48034856 - 48034820
Alignment:
Q  102 agtggtataatgtgtgtatggaaaaaagtgtgaacat 138  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  48034856 agtggtacaatgtgtgtatggaaaaaagtgtgtacat 48034820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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