View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_low_7 (Length: 371)
Name: NF10378_low_7
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 51293490 - 51293838
Alignment:
| Q |
18 |
aattcaaaccgccaaactatatcttgttgaataagttacatatagtaatagtagtactaagttaattgatgaaaaattccatagaattattcacatttaa |
117 |
Q |
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| T |
51293490 |
aattcaaaccgccaaactatatcttgttgaataagttacatatagtaatagtagtactaagttaattgatgaaaaattccatagaattattcacatttaa |
51293589 |
T |
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| Q |
118 |
tattacgacagaccttctaatcttgttggtgaagtagttagttactctagggttccgagaaagaggaaaccaggaaaggaatnnnnnnngatcacagaaa |
217 |
Q |
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| T |
51293590 |
tattacgacagaccttctaatcttgttggtgaagtagttagttactctagggttccgagaaagaggaaaccaggaaaggaataaaaaaagctcacagaaa |
51293689 |
T |
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| Q |
218 |
tttgagatgaaaagtgagaaagacatacattcaacaaagttaggagcagaagcattaacctaattccgtaggcactattatatttatttatttatataaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
51293690 |
tttgagatgaaaagtgagaaagacatacattcaacaaagttaggagcagaagcattaatctaattccgtaggcactattatat---tttatttatataaa |
51293786 |
T |
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| Q |
318 |
gaaggcatcttttgtgtgggggaaacaaaagcaaagctgggtgggtagtagt |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51293787 |
gaaggcatcttttgtgtgggggaaacaaaagcaaagctgggtgggtagtagt |
51293838 |
T |
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