View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10378_low_8 (Length: 364)
Name: NF10378_low_8
Description: NF10378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10378_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 33382933 - 33382597
Alignment:
| Q |
18 |
agtcccgtagcaatttctttaagctgagagtttaagaaattcgccatacttccaaagcatatataaacaactgaattaggtttcttcatgtcaagccatt |
117 |
Q |
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| T |
33382933 |
agtcccgtagcaatttctttaagctgagagtttaagaaattcgccatacttccaaagcatatataaacaactgaattaggtttcttcatgtcaagccatt |
33382834 |
T |
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| Q |
118 |
ttaggcagtcatggtgatgaatagaatcttctcttcctctatttgctttttcctctatatccttattgcaaagagataaaggaccaatatgccaagcttt |
217 |
Q |
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| T |
33382833 |
ttaggcactcatggtgatgaatagaatcttctcttcctctatttgctttttcctctatatccttattgcaaagagataaaggaccaatatgccaagcttt |
33382734 |
T |
|
| Q |
218 |
tcttccaagtactttcctgtaatactctgcataaacattttcaagttcatagaagctgtttacaaccactccaaaactcttcagttctgctttctttgct |
317 |
Q |
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| T |
33382733 |
tcttccaagtactttcctgtaatactctgcataaacattttcaagttcatagaagctgtttacaaccactccaaaactcttcagttctgctttctttgct |
33382634 |
T |
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| Q |
318 |
tcctgtagtaacctagacattccttcaaattcctttg |
354 |
Q |
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| T |
33382633 |
tcctgtagtaacctagacattccttcaaattcctttg |
33382597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 27688888 - 27688961
Alignment:
| Q |
18 |
agtcccgtagcaatttctttaagctgagagtttaagaaattcgccatacttccaaagcatatataaacaactga |
91 |
Q |
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|||||| |||||||||| |||||||||||||| | ||| | | |||||||||||| || || ||||||||||| |
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| T |
27688888 |
agtcccatagcaatttccttaagctgagagttaaggaagtgtgtcatacttccaaaacacatgtaaacaactga |
27688961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 27689074 - 27689150
Alignment:
| Q |
198 |
ggaccaatatgccaagcttttcttccaagtactttcctgtaatactctgcataaacattttcaagttcatagaagct |
274 |
Q |
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||||| |||||||| ||||| |||||||||| | || ||||| |||||||||||||| || || ||||||||||| |
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| T |
27689074 |
ggacctatatgccattcttttattccaagtacctctctataataatctgcataaacattctcgagctcatagaagct |
27689150 |
T |
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