View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_high_1 (Length: 593)
Name: NF10379_high_1
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_high_1 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 312; Significance: 1e-175; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 9 - 557
Target Start/End: Complemental strand, 144348 - 143777
Alignment:
| Q |
9 |
aatttccttttacaataatcgtttgccaaatgtacttcaaaagctgcagtctcaactttctggctttacctttatgcattcagatctttatgagtccatt |
108 |
Q |
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|||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||| | ||||| || |||||||||||||||||| | |
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| T |
144348 |
aatttcctattataataattgtttgcctaatgtacttcaaaagctgcagtctcaacttcctggcttttcttttatccactcagatctttatgagtccttc |
144249 |
T |
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| Q |
109 |
atggatctaatggaaaatggatacaaatatggtaagaagaaattcaaattgttattcaatgtttgatttaacaagattcagatcctctctcacggagcag |
208 |
Q |
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||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
144248 |
atgtatctaagagaaaatggacacaaatatggtaagaagaaattcaaatggttattcaatgtttgatttagcaagattcagatcctctctcacggtgcag |
144149 |
T |
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| Q |
209 |
ctgcaacaattttttaactagttgatcc--acaactgcttcatgggagaggacctgagtcaaacttataatggcttatgttggcattggcggacgaaatt |
306 |
Q |
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|| ||| ||||||||||| ||| |||| ||| ||||||| ||||| |||||||||||| |||||||||| |||||||||||||||| |||| |||| |
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| T |
144148 |
ctataaccattttttaactggttaatccatacagctgcttcgtgggaaaggacctgagtcgaacttataataacttatgttggcattggtggaccgaatt |
144049 |
T |
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| Q |
307 |
gaataataacttattttctttgcagggatattagaaacatggaaacc--------------------ttggtgatctccactgccatccttataatgcta |
386 |
Q |
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||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |
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| T |
144048 |
gaatagtaactgattttctttgtagggatattagaaacatggaaaccttgctgcccaaataacatttttggtgatctccaatgtcatccttataatgcta |
143949 |
T |
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| Q |
387 |
cttgtgcaaacagaaacactcatctcttctttgatgatcacccgtctcaaattgccaataaaatatatgcaacacgttgctttattgagaagacaatatg |
486 |
Q |
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| T |
143948 |
cttgttcaaacagaaacactcatctcttctttgatgatcacccctctcaaattgccaacaaaatatatgcaacacgttgcttcattgagaagacaatatg |
143849 |
T |
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| Q |
487 |
caagccatctggcttcaagatgctctaattaat-aatcagttgtattatttgaacaacaaaattcaaatata |
557 |
Q |
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| T |
143848 |
caagccatctagcttcaaaatgctctaattaataaatcagttgtattatttgaacaacaaaatacaaatata |
143777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 356
Target Start/End: Complemental strand, 36699349 - 36699000
Alignment:
| Q |
9 |
aatttccttttacaataatcgtttgccaaatgtacttcaaaagctgcagtctcaactttctggctttacctttatgcattcagatctttatgagtccatt |
108 |
Q |
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|||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || |
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| T |
36699349 |
aatttcctattataataatcgtttgcctaatgtacttcaaaagctgcagtctcaacttcctggctttacttttatgcattcagatctttatgagtccttt |
36699250 |
T |
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| Q |
109 |
atggatctaatggaaaatggatacaaatatggtaagaagaaattcaaattgttattcaatgtttgatttaacaagattcagatcctctctcacggagcag |
208 |
Q |
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||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
36699249 |
atgtatctaagagaaattggatacaaatatggtaagaagaaattcaaatggttattcaatgtgtgatttaacaagattcagatcctctctcacggtgcag |
36699150 |
T |
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| Q |
209 |
ctgcaacaattttttaactagttgatcc--acaactgcttcatgggagaggacctgagtcaaacttataatggcttatgttggcattggcggacgaaatt |
306 |
Q |
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|||||||||||||||||||||| |||| ||| |||||| | |||||||| | ||||| ||||| || ||||||||||||||||||||| | || | |
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| T |
36699149 |
ttgcaacaattttttaactagttaatccatacagctgctttttcggagaggatccgagtcgaacttttataggcttatgttggcattggcgggccgaact |
36699050 |
T |
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| Q |
307 |
gaataataacttattttctttgcagggatattagaaacatggaaaccttg |
356 |
Q |
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| T |
36699049 |
gaatagtaactaattttctttacagggatatcagaaacatggaaaccttg |
36699000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 387 - 588
Target Start/End: Complemental strand, 36699003 - 36698802
Alignment:
| Q |
387 |
cttgtgcaaacagaaacactcatctcttctttgatgatcacccgtctcaaattgccaataaaatatatgcaacacgttgctttattgagaagacaatatg |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
36699003 |
cttgtgcaaacagaaacactcatctcttctttgatgatcacgcgtctcaaattgccaacaaaatatatgcaacacattgctttattgagaagacaatatg |
36698904 |
T |
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| Q |
487 |
caagccatctggcttcaagatgctctaattaataatcagttgtattatttgaacaacaaaattcaaatatacgccctaagtataatatatgcctatgctt |
586 |
Q |
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| T |
36698903 |
caagccatctggcttcaagatgctctaattaataatcagttgtattatttgaacaacaaaattcaaatatacgccctaagtataatatatgtctatggtt |
36698804 |
T |
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| Q |
587 |
ct |
588 |
Q |
| |
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|| |
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| T |
36698803 |
ct |
36698802 |
T |
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Back To:
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