View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_high_10 (Length: 371)
Name: NF10379_high_10
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 52327820 - 52327659
Alignment:
| Q |
30 |
tatgaattatgatgtaattttctgctcaccatttaaaatgacggatggccataattagtgacaaatttattccataatccgttgtgaggccaaaaatgac |
129 |
Q |
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| T |
52327820 |
tatgaattatgatgtaattttctgctcaccatttaa--tgacggatggccataattagtgacgaatttattccataacccgttgtgaggccaaaaatgac |
52327723 |
T |
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| Q |
130 |
tacgcatttttcgttactgaagtattttgtgacagaatttatgagcgttagtgactaaatacta |
193 |
Q |
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| T |
52327722 |
tacggatttttcgttactgaagtattttgtaacagaatttatgagcgttagtgactaaatacta |
52327659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 52327603 - 52327474
Alignment:
| Q |
190 |
actattatttattattaaagaaatacctgcaccaccgagaaaataggacttggtggacgacggaggtgtcaccactgccggaaattcaatgaactccacc |
289 |
Q |
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| T |
52327603 |
actattatttattattaaagaaatacctgcaccaccgagaaaataggacttggtggacgacggaggtgtcaccactaccggaaattcaatgaactccacc |
52327504 |
T |
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| Q |
290 |
ttcactccggtgatcatgaatgctgccttt |
319 |
Q |
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| T |
52327503 |
ttcactccggtgatcatgaatgctgccttt |
52327474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 52324462 - 52324366
Alignment:
| Q |
207 |
aagaaatacctgcaccaccgagaaaataggacttggtggacgacggaggtgtcaccactgccggaaattcaatgaactccaccttcactccggtgat |
303 |
Q |
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| T |
52324462 |
aagaaatacctgcaccaccgaggaaataggacttgggggaggcaggaggtgtcaccactgccggaaattcaatattctccaccttcactccggtgat |
52324366 |
T |
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