View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_high_11 (Length: 316)
Name: NF10379_high_11
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 25892991 - 25893290
Alignment:
| Q |
11 |
cataggcaggaggcagttcctaggattgtctgaaggaaggtgatggtgatgcaggaggcttcaagtcctcatacctgaaaagtttattttcataagatca |
110 |
Q |
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| T |
25892991 |
cataggcaggaggcagttcctaggattgtctgaaggaaggtgatggtgatgcaggaggcttcaagtcctcatacctgaaaagttcattttcataagatca |
25893090 |
T |
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| Q |
111 |
taatgtcaatctggaccatccgatttcaaccaaaacggcttccaatgcagtgactgc--------aggattccttgaccttggggaattcaggctcctct |
202 |
Q |
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| T |
25893091 |
taatgtcaatctggaccatccgatttcaaccaaaacggcttccaatgcagtgactgcatgactggaggattccttgatcttggggaattcaggctcctct |
25893190 |
T |
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| Q |
203 |
ctttctctcttctataataacgaatgaagaatctttggagaataaataacaaatatttatggcaagttggaatcaacttacattgcataaggtgaaagtg |
302 |
Q |
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| T |
25893191 |
ctttctctcttctataataacgaatgaagaatctttggagaataaataacaaatattgatggcaagttggaatcaacttacattgcataaggtgaaagtg |
25893290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 25894415 - 25894453
Alignment:
| Q |
264 |
gcaagttggaatcaacttacattgcataaggtgaaagtg |
302 |
Q |
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| T |
25894415 |
gcaagttgaaatcaacttacattgcataaggtgaaagtg |
25894453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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