View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_high_12 (Length: 310)
Name: NF10379_high_12
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_high_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 128 - 310
Target Start/End: Original strand, 48097896 - 48098080
Alignment:
| Q |
128 |
tatttttcttcctattttagttgtttctgcaattttagaaagatggtccttagctcatttatgtagtttcacaacaattctccacttccactattaaaat |
227 |
Q |
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| T |
48097896 |
tatttttcttcctattttagttgtttctgcaattttagaaagatggtccttagctcatttatgtagtttcacaacaattctccacttccgctattaaaat |
48097995 |
T |
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| Q |
228 |
tgaagtaattgaggcaatgtgagta--tttgaaagatgctcgtatcacatgtttaagaagctcaatgaatatgggtgcacctcac |
310 |
Q |
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| T |
48097996 |
tgaagtaattgaggcaatgtgagtatttttgaaagatgctcgtatcacatgtttaagaagctcaatgaatatgggtgcacctcac |
48098080 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 48097829 - 48097903
Alignment:
| Q |
17 |
gaagcaaagtgaggcggtttatatagtagtggaaagaaatataatgcaatgtgacaagaaatcaaagtatttttc |
91 |
Q |
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| T |
48097829 |
gaagcaaagtgaggcggtttatatagtagtggaaagaaaaaaaatgcaatgtgacaagaaatcaaagtatttttc |
48097903 |
T |
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