View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10379_high_14 (Length: 279)
Name: NF10379_high_14
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 121 - 275
Target Start/End: Complemental strand, 34353777 - 34353632
Alignment:
| Q |
121 |
attcaatgtaaaccttttactcatactaataccaacatttttagtttcatatccggtttcaactttcagaattgagacctggannnnnnngcactcaaac |
220 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34353777 |
attcaatggaaaccttttactcatactaataccaacatttttagtttcatatccggtttcaactttcagaattgagacctggatttttttg--------- |
34353687 |
T |
|
| Q |
221 |
cactcaaggcattaaattatatctagactttacatcttagttcttcatctctctc |
275 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
34353686 |
cactcaaggcattaaattatatctagaatttacatcttagttctttatatctctc |
34353632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 34354030 - 34353937
Alignment:
| Q |
19 |
cacattggatcaagaacaaccatacaaatatgagagagacgccaccatcatatctctatctaaaaccttacaacatcaagttaat-ggcgattcac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34354030 |
cacattggatcaagaacaaccatacaaat--gagagagacaccaccatcatatctctatctaaaaccttacaacatcaagttaatgggcgattcac |
34353937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University