View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_high_15 (Length: 272)
Name: NF10379_high_15
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_high_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 42509473 - 42509202
Alignment:
| Q |
1 |
actcttgatcgattatgtcattnnnnnnnttagaaataagacgtaccatgaaggcgaacagctaggctaccgttctgaacaaagtcagtaaccaagagct |
100 |
Q |
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| T |
42509473 |
actcttgatcgattctgtcattaaaaaaattagaaataagacgtaccatgaaggcgaacagctaggctaccgttctgaacaaagtcggtaaccaagagct |
42509374 |
T |
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| Q |
101 |
tttcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactcttccttccctac |
200 |
Q |
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| T |
42509373 |
tctcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactcttccttccctac |
42509274 |
T |
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| Q |
201 |
attgttcatttgcttaaacctcttcaccactattgttggcccattcgtcaaagaggccttgtaagaagaact |
272 |
Q |
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| T |
42509273 |
attgttcatttgcttaaacctcttcaccactattgttggcccattcgtcaaagaggccttgtaagaagaact |
42509202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 36125513 - 36125383
Alignment:
| Q |
97 |
agcttttcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactcttccttcc |
196 |
Q |
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||||| || ||||||| ||||||| | ||||| ||||| | | ||||||||| |||||||||||| |||||||||||| || | ||||||| || | |
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| T |
36125513 |
agcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttttgc |
36125414 |
T |
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| Q |
197 |
ctacattgttcatttgcttaaacctcttcac |
227 |
Q |
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| T |
36125413 |
caactttgttcatgtgcttaaatcttttcac |
36125383 |
T |
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