View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10379_high_19 (Length: 240)

Name: NF10379_high_19
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10379_high_19
NF10379_high_19
[»] chr7 (2 HSPs)
chr7 (103-240)||(43406231-43406368)
chr7 (18-102)||(19007790-19007874)
[»] chr3 (4 HSPs)
chr3 (103-232)||(46906191-46906319)
chr3 (102-173)||(34630588-34630659)
chr3 (104-155)||(34630735-34630786)
chr3 (103-153)||(22899519-22899569)
[»] chr8 (4 HSPs)
chr8 (101-181)||(29739907-29739987)
chr8 (103-181)||(10756450-10756528)
chr8 (103-155)||(10756597-10756649)
chr8 (103-155)||(29740056-29740108)
[»] chr6 (8 HSPs)
chr6 (102-181)||(17193861-17193940)
chr6 (102-181)||(25054438-25054517)
chr6 (102-181)||(30780268-30780347)
chr6 (103-181)||(3962538-3962616)
chr6 (103-157)||(17193740-17193794)
chr6 (101-155)||(25054586-25054640)
chr6 (103-155)||(3962685-3962737)
chr6 (103-155)||(30780416-30780468)
[»] chr5 (5 HSPs)
chr5 (103-181)||(11772741-11772819)
chr5 (103-181)||(17534666-17534744)
chr5 (102-155)||(8881021-8881074)
chr5 (103-155)||(11772888-11772940)
chr5 (103-155)||(17534545-17534597)
[»] chr4 (2 HSPs)
chr4 (103-183)||(51268324-51268404)
chr4 (106-155)||(51268472-51268521)
[»] chr2 (1 HSPs)
chr2 (101-185)||(18900622-18900706)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 43406368 - 43406231
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttttatttcattacctagtaaccg 202  Q
    |||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||    
T  43406368 gagaaatgctaaggataaaccctcaaacacactcttttgacacactccaataataggaagccacctcacctcaattttttattccattacctagtaatcg 43406269  T
Q  203 gttgtgccagttttgaaagacagacacacattgttgct 240  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  43406268 gttgtgccagttttgaaagacagacacacgttgttgct 43406231  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 19007790 - 19007874
Alignment:
Q  18 ttagtgttccgaattgggcctcaactcacgtcaccagcccgattcacaacatccctctagattaaaattcacatataaacatcta 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19007790 ttagtgttccgaattgggcctcaactcacgtcaccagcccgattcacaacatccctctagattaaaattcacatataaacatcta 19007874  T

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Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 46906319 - 46906191
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttttatttcattacctagtaaccg 202  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  46906319 gagaaatgctaaggacaaaccctcaaacacactctttttacacactccaataataggaagccacctca-cccaattttttattccattacctggtaaccg 46906221  T
Q  203 gttgtgccagttttgaaagacagacacaca 232  Q
    ||||||||||||||||||||||||||||||    
T  46906220 gttgtgccagttttgaaagacagacacaca 46906191  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 34630588 - 34630659
Alignment:
Q  102 agagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccc 173  Q
    ||||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  34630588 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccc 34630659  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 34630786 - 34630735
Alignment:
Q  104 agaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    ||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  34630786 agaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 34630735  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 22899569 - 22899519
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaat 153  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||    
T  22899569 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaat 22899519  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 29739907 - 29739987
Alignment:
Q  101 tagagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 181  Q
    |||||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  29739907 tagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaattttt 29739987  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 10756450 - 10756528
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 181  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  10756450 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaattttt 10756528  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 10756649 - 10756597
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  10756649 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 10756597  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 29740108 - 29740056
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  29740108 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 29740056  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 17193940 - 17193861
Alignment:
Q  102 agagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 181  Q
    ||||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  17193940 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaattttt 17193861  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 25054438 - 25054517
Alignment:
Q  102 agagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 181  Q
    ||||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  25054438 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaattttt 25054517  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 30780268 - 30780347
Alignment:
Q  102 agagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 181  Q
    ||||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  30780268 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaattttt 30780347  T

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Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 3962538 - 3962616
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 181  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3962538 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaattttt 3962616  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 17193740 - 17193794
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataata 157  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||||    
T  17193740 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataata 17193794  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 25054640 - 25054586
Alignment:
Q  101 tagagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    |||||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  25054640 tagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 25054586  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 3962737 - 3962685
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  3962737 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 3962685  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 30780468 - 30780416
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  30780468 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 30780416  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 11772741 - 11772819
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 181  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  11772741 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaattttt 11772819  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 17534744 - 17534666
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttt 181  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  17534744 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaattttt 17534666  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 8881021 - 8881074
Alignment:
Q  102 agagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    ||||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  8881021 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 8881074  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 11772940 - 11772888
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  11772940 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 11772888  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 17534545 - 17534597
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  17534545 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 17534597  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 51268324 - 51268404
Alignment:
Q  103 gagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaatttttta 183  Q
    |||||||| |||||||||||  |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  51268324 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaaattttta 51268404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 51268521 - 51268472
Alignment:
Q  106 aaatgttaaggacaaaccttcaaacacactctttttacacactccaataa 155  Q
    ||||| |||||||||||  |||||||||||||||  ||||||||||||||    
T  51268521 aaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 51268472  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 18900622 - 18900706
Alignment:
Q  101 tagagaaatgttaaggacaaaccttcaaacacactctttttacacactccaataataggaagccacctcaccccaattttttatt 185  Q
    |||||||||| |||||||| ||  |||||||||||||||| |||| ||||||| | | || ||||| ||||| | ||||||||||    
T  18900622 tagagaaatgctaaggacacactctcaaacacactcttttaacactctccaatgacatgaggccacatcacctccattttttatt 18900706  T

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