View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10379_high_2 (Length: 540)

Name: NF10379_high_2
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10379_high_2
NF10379_high_2
[»] chr1 (2 HSPs)
chr1 (182-526)||(50871298-50871648)
chr1 (57-165)||(50871156-50871264)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 182 - 526
Target Start/End: Original strand, 50871298 - 50871648
Alignment:
Q  182 tttatttctccaagtagatagattcctccaataagagataaagaaagttggtttnnnnnnnnnnnnnnnnnnngtagcttactaactcacctgagagaaa 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||| |||||||||||||||||||||||    
T  50871298 tttatttctccaagtagatagattcctccaataagagataaagaaagttggttttaataaaataaataaaaaagtatcttactaactcacctgagagaaa 50871397  T
Q  282 tcagattcttggttaagagatttgaaagaagtgaggtttatgccaaaatctggtagcaaagttgaattgggtggttgaatctgcctctgccatgcacaaa 381  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50871398 tcagattcttggttaagagatttgaaggaagtgaggtttatgccaaaatctggtagcaaagttgaattgggtggttgaatctgcctctgccatgcataaa 50871497  T
Q  382 actgttgttcatcctttattcctttcttgttctgcagcagatcatgctgcagatcatgctgatcaccca------------tggtattggcattggcatt 469  Q
    |||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||            ||||||||| |||||||||    
T  50871498 actgttgttcatcctttattcctttcttgttctgcagca------gctgcagatcatgctgatcacccatggtattggtattggtattggtattggcatt 50871591  T
Q  470 ggcattgagctgtacatagtcataaaagcagtacggttttgttactgcatcatcaca 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50871592 ggcattgagctgtacatagtcataaaagcagtacggttttgttaccgcatcatcaca 50871648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 50871156 - 50871264
Alignment:
Q  57 tatagcctaggttcttaagcagctatagcattcacagagaaattaaacccaaaaccattaccacactccaccacctaaaaattaagaaagctagcagcat 156  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50871156 tatagcctaggttcttaagcagctattgcattcacagagaaattaaacccaaaaccattaccacactccaccacctaaaaattaagaaagctagcagcat 50871255  T
Q  157 agtgtttct 165  Q
    |||||||||    
T  50871256 agtgtttct 50871264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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