View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_high_3 (Length: 519)
Name: NF10379_high_3
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 34353665 - 34353171
Alignment:
| Q |
1 |
tctagactttacatcttagttctttatatctctcataagtcttaacttgaagggaattatccttcaaaggctcatgacttgctaagtaatggcagtggtt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34353665 |
tctagaatttacatcttagttctttatatctctcataagtcttaacttgaagggaattatccttcaaaggctcatgacttgctaagtaatggcggtggtt |
34353566 |
T |
|
| Q |
101 |
tgcagaattggagttggcggttaggtgagtgcagacagggtcagacaagtggttataaaaaatatttcaatcatggaggtattcaaatggaaaatattat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34353565 |
tgcagaattggagttggcggttaggtgagtgctgacagggtcagacaagtggttataaaaaatatttcaatcatggaggtattcaaat-------attat |
34353473 |
T |
|
| Q |
201 |
atttcactgtttcagtgctaattattattttaatctatcttttactatatttcaatcatggtgtaatattaaaataaacaaacacaatcaaccacgatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34353472 |
atttcactgtttcagtgctaattattattttaatctatcttttactatatttcaatcatggtgtaatattaaaataaacaaacacaatcaaccacgatct |
34353373 |
T |
|
| Q |
301 |
tgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgagaattctcaacaagcaacaatggtttcttcctccttagtcaagtctt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
34353372 |
tgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgagaattctcaacaagcgacaatggtttcttcctccttagtgaagtctt |
34353273 |
T |
|
| Q |
401 |
tgtcttgtgcttttcgtgcctgccgtatcaaccactctttcagctccaccaggatcttttcgtcttccattgtctctgtcgaatcccaaactagcaatga |
500 |
Q |
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| T |
34353272 |
tgtcttgtgcttttcgtgcctgccgtatcagccactctttcagctccaccaggatcttttcgtcttccattgtctctgtcgaatcccaaactagcaacga |
34353173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 83 - 503
Target Start/End: Complemental strand, 34359207 - 34358795
Alignment:
| Q |
83 |
taagtaatggcagtggtttgcagaattggagttggcggttaggtgagtgcagacagggtcagacaagtggttataaaaaatatttcaatcatggaggtat |
182 |
Q |
| |
|
|||||| |||| |||||||| |||||| ||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| || |
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| T |
34359207 |
taagtactggcggtggtttgtagaattcaagttggca-ttaggtgagagcagacagggccagaaaagtggttataaaaaatatttcaatcatggagggat |
34359109 |
T |
|
| Q |
183 |
tcaaatggaaaatattatatttcactgtttcagtgctaattattattttaatctatcttttactatatttcaatcatggtgtaatattaaaataaacaaa |
282 |
Q |
| |
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|||||| ||||||||||||| | |||||| |||| ||||||||||||||||||||| || | ||||||||| |||||||||||||||||||| |
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| T |
34359108 |
tcaaat-------attatatttcactatctcagtgttaatagatattttaatctatcttttactgtactgcaatcatggagtaatattaaaataaacaaa |
34359016 |
T |
|
| Q |
283 |
cacaatcaaccacgatcttgtgtatttcttgcgtgtaccttatcttcttttaataatgttatgtgatctgagaattctcaacaagcaacaatggtttctt |
382 |
Q |
| |
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|||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
34359015 |
cacaatcaaccatgatcttgtgcatttcgtgcgtgtaccttatcttcttttaacaatgttatgtgatctgagaattctcaacaaacaacaatggcttctt |
34358916 |
T |
|
| Q |
383 |
cctccttagtcaagtctttgtcttgtgcttttcgtgcctgccgtatcaaccactctttcagctccaccaggatcttttcgtcttccattgtctctgtcga |
482 |
Q |
| |
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|||||||||||||||||||| |||||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||||| |
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| T |
34358915 |
cctccttagtcaagtctttgacttgtgctttgcgtgctggccgtatcagccactgtttcagctccaccaggatcttttcgtcttccactgtttatgtcga |
34358816 |
T |
|
| Q |
483 |
atcccaaactagcaatgatgt |
503 |
Q |
| |
|
||||||||||||||| ||||| |
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|
| T |
34358815 |
atcccaaactagcaacgatgt |
34358795 |
T |
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