View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_high_4 (Length: 454)
Name: NF10379_high_4
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Complemental strand, 54474041 - 54473611
Alignment:
| Q |
15 |
caaaatctgccacctaaatggatagaatcacttgataattacaattctttaataactaaacatatagtaaatgatcattatacgtactttggcttcaaag |
114 |
Q |
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| T |
54474041 |
caaaatctgccacctaaatggatagaatcacttgataattacaattctttaataactaaacatatagtaaatgatcattatacgtactttggcttcaaag |
54473942 |
T |
|
| Q |
115 |
ttgttttcaattagaatgtttgcacccttgatgtctcggtgaatgattctagggtgacctgcaggttattgtttgaacaagttattaatgataatgttag |
214 |
Q |
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| T |
54473941 |
ttgttttcaattagaatgtttgcacccttgatgtctcggtgaatgattctagggtgacctgcaggttattgtttgaacaagttattaatgataatgttag |
54473842 |
T |
|
| Q |
215 |
tttttcgggcttaa-cctctagtttttggggggaagagggtaaattctggtcaatgaatattctcgccatattcgaatttgagttctctctacggattca |
313 |
Q |
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| T |
54473841 |
tttttcgggcttaaccctctagtttttggggggaagagggtaaattctggtcaatgaatattctcgccatattcgaatttgagttctctctacggattca |
54473742 |
T |
|
| Q |
314 |
tccataaaaatgtattttagtcatttgtcaaaattagattacaagcacatagtaacttacagtcctcatgtaaataagcaagtcctttggcggatccaac |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54473741 |
tccataaaaatgtattttagtcatttgtcaaaattagattacaagcacatagtaacttacagtcctcgtgtaaataagcaagtcctttggcggatccaac |
54473642 |
T |
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| Q |
414 |
cgcaattttaagccttgtggcccaattcatc |
444 |
Q |
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| T |
54473641 |
cgcaattttaagccttgtggcccaatccatc |
54473611 |
T |
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