View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10379_high_9 (Length: 378)

Name: NF10379_high_9
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10379_high_9
NF10379_high_9
[»] scaffold0927 (1 HSPs)
scaffold0927 (19-378)||(368-727)
[»] chr3 (5 HSPs)
chr3 (20-372)||(28584189-28584554)
chr3 (92-372)||(28573044-28573324)
chr3 (92-372)||(26314189-26314471)
chr3 (120-372)||(28566327-28566579)
chr3 (163-364)||(20615035-20615236)
[»] chr6 (2 HSPs)
chr6 (86-372)||(24080720-24081008)
chr6 (92-372)||(24069736-24070016)
[»] scaffold1126 (1 HSPs)
scaffold1126 (92-251)||(2557-2718)
[»] scaffold1033 (1 HSPs)
scaffold1033 (92-257)||(1-166)
[»] scaffold1029 (1 HSPs)
scaffold1029 (92-257)||(1-166)
[»] scaffold0870 (1 HSPs)
scaffold0870 (92-203)||(4-115)
[»] chr2 (3 HSPs)
chr2 (158-353)||(2603159-2603357)
chr2 (298-347)||(2600015-2600064)
chr2 (300-347)||(2591881-2591928)


Alignment Details
Target: scaffold0927 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 727 - 368
Alignment:
19 attaaagtcccacatcaatgagagtctcacaacaaatgttgaagtgtaaaggaaccatgaaaacaataattacaaatcaatgtgttgtacataaacaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
727 attaaagtcccacatcaatgagagtctcacaacaaatgttgaagtgtaaaggaaccatgaaaacaataattacaaatcaatgtgttgtacataaacaaca 628  T
119 gatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
627 gatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttata 528  T
219 gtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgagaactgatttgcgaccagaatttcttgattgagacatttc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
527 gtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgaaaactgatttgcgaccataatttcttgattgagacatttc 428  T
319 cattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaataccctga 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
427 cattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaatatcctga 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 28584189 - 28584554
Alignment:
20 ttaaagtcccacatcaatgagagtctcacaacaaatgttgaagtgtaaaggaaccatgaaaacaata-------------attacaaatcaatgtgttgt 106  Q
    ||||||| | ||||||||||||||||| |||||||  |||||||||||||||||||||| |||||||             ||||||||||||| ||||||    
28584189 ttaaagttcgacatcaatgagagtctcccaacaaaaattgaagtgtaaaggaaccatgagaacaatattgcctaactgaaattacaaatcaatatgttgt 28584288  T
107 acataaacaacagatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggagattagagaggctcgg 206  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
28584289 acataaacaacagattacaatatttgaaaatgtactaattacacccaacactaacattaatcaatgacttgacatgttcctggagattagagaggcttgg 28584388  T
207 attgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgagaactgatttgcgaccagaatttcttga 306  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
28584389 tttgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaagttggaaaatgatgatgaaaactgatttgcaaccagaatttcttga 28584488  T
307 ttgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaata 372  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
28584489 ttgagaaatttccattcatttgaaatcatgtgagcaacatgtccttgcacgtcttcactggaaata 28584554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 92 - 372
Target Start/End: Original strand, 28573044 - 28573324
Alignment:
92 aaatcaatgtgttgtacataaacaacagatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggag 191  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||    
28573044 aaatcaatatgttgtacataaacaacagaacacaatatctgaaaatgtactaattacacccaacactaacattaatcaatgacttgacatgttcctggag 28573143  T
192 attagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgagaactgatttgcg 291  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||     
28573144 attagagaggcttgggttgctcttatagtggtacatgaggggaaccattcttgcagcattgagacaaaagttggaaaatgacgatgaaaactgatttgca 28573243  T
292 accagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaata 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
28573244 accagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtctttgcacgtcttcaccggaaata 28573324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 92 - 372
Target Start/End: Original strand, 26314189 - 26314471
Alignment:
92 aaatcaatgtgttgtacataaacaaca--gatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatgg 189  Q
    |||||||| |||||||||||||||||   |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |||    
26314189 aaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactagcattaatcaatgacttgacatgttcctgg 26314288  T
190 agattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgagaactgatttg 289  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||    
26314289 agattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgagacaaaaattggaaaatgatgatgaaaattgatttg 26314388  T
290 cgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaata 372  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
26314389 caaccagaatttcttgattgagacgtttccattcatttgaaatcatgtgagcaacatgtctttgcacgtcttcaccggaaata 26314471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 120 - 372
Target Start/End: Original strand, 28566327 - 28566579
Alignment:
120 atcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatag 219  Q
    ||||||| |||| || ||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||    
28566327 atcacaaaatttaaagatgtactaattgcacccaacactaacattaatcaatgagttaacatgttcctggagattagagaggctcgggttgctcttatag 28566426  T
220 tggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgagaactgatttgcgaccagaatttcttgattgagacatttcc 319  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
28566427 tggtacatgaggggaaccattctagcagcattgagacaaaaattggaaaatgatgatgaaaactgatttgtgaccagaatttcttgattgagacatttcc 28566526  T
320 attcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaata 372  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
28566527 attcatttgaaatcatgtgagcaacatgtcgttgcacgtcttcactggaaata 28566579  T

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Target: chr3; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 163 - 364
Target Start/End: Original strand, 20615035 - 20615236
Alignment:
163 ttaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaat 262  Q
    ||||||||||||||||||||||| |  ||| |||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| || |||||||    
20615035 ttaatcaatgacttgacatgttcctttagactagagaggcttgggttgctcttataatggtacatgagaggaaccattctagcagcattaaggcaaaaat 20615134  T
263 tggaaaatgatgatgagaactgatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttc 362  Q
    ||| |||||||||||  ||   || || |  || |||||||||||| |||||||||||||||||| ||||||| | |||||||||| ||||||| |||||    
20615135 tggtaaatgatgatggaaatacatatgggttcaaaatttcttgatttagacatttccattcatttaaaatcatctcagcaacatgtctttgcacatcttc 20615234  T
363 ac 364  Q
    ||    
20615235 ac 20615236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 86 - 372
Target Start/End: Complemental strand, 24081008 - 24080720
Alignment:
86 aattacaaatcaatgt--gttgtacataaacaacagatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgt 183  Q
    |||||||||||||| |  |||||||||||||||||||| ||||||||||||| |||| |||||||| ||||||| ||||||||||||| |||||||||||    
24081008 aattacaaatcaatatatgttgtacataaacaacagattacaatatttgaaactgtactaattgcatccaacaccaacattaatcaataacttgacatgt 24080909  T
184 tcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgagaact 283  Q
    || | ||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||    
24080908 tcctagagattagataggctagggttgctcttatagtggtacatgaggggaaccattcttgcagcattgatacaaaaattggaaaatgatgatgaaaact 24080809  T
284 gatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaata 372  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||||    
24080808 tatttgcaaccagaatttcttgattgagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacgtcttccccggaaata 24080720  T

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Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 92 - 372
Target Start/End: Original strand, 24069736 - 24070016
Alignment:
92 aaatcaatgtgttgtacataaacaacagatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggag 191  Q
    |||||||| |||| |||||||||||||||||||||||| |||  ||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||    
24069736 aaatcaatatgttatacataaacaacagatcacaatatatgagtatgtactaattgcatccaacaccaacattaatcaatgacttgacatgttcctggag 24069835  T
192 attagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagacaaaaattggaaaatgatgatgagaactgatttgcg 291  Q
    |||||||||||| |  |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |||| ||||| |    
24069836 attagagaggcttgagttgctcttatagtggtacatgaggagaaccattcttgcagcattgagacaaaaattggaaaatgatgatgaaaacttatttgtg 24069935  T
292 accagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttgcacgtcttcactggaaata 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | |||||||    
24069936 accagaatttcttgattgagacatttccattcatttgaaatcatgcgagcaacatgtctttgcacctcttcgccggaaata 24070016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 2557 - 2718
Alignment:
92 aaatcaatgtgttgtacataaacaaca--gatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatgg 189  Q
    |||||||| |||||||||||||||||   |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |||    
2557 aaatcaatatgttgtacataaacaactatgatcacaatatttgaaaatgtactaattgcacccaccactagcattaatcaatgacttgacatgttcctgg 2656  T
190 agattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcatt 251  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
2657 agattagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcatt 2718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 92 - 257
Target Start/End: Complemental strand, 166 - 1
Alignment:
92 aaatcaatgtgttgtacataaacaacagatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggag 191  Q
    |||||||| |||||| ||||||||||| | |||||  ||||||||| |  |||| ||  ||||||| ||||||||||||||||||||||||||| |||||    
166 aaatcaatatgttgtgcataaacaacataacacaaggtttgaaaatatgctaatcgcgtccaacaccaacattaatcaatgacttgacatgttcctggag 67  T
192 attagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagaca 257  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
66 attagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgagaca 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 92 - 257
Target Start/End: Complemental strand, 166 - 1
Alignment:
92 aaatcaatgtgttgtacataaacaacagatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggag 191  Q
    |||||||| |||||| ||||||||||| | |||||  ||||||||| |  |||| ||  ||||||| ||||||||||||||||||||||||||| |||||    
166 aaatcaatatgttgtgcataaacaacataacacaaggtttgaaaatatgctaatcgcgtccaacaccaacattaatcaatgacttgacatgttcctggag 67  T
192 attagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagaca 257  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
66 attagagaggcttggattgctcttatagtggtacatgaggggaaccattctagcagcattgagaca 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 115 - 4
Alignment:
92 aaatcaatgtgttgtacataaacaacagatcacaatatttgaaaatgtattaattgcacccaacactaacattaatcaatgacttgacatgttcatggag 191  Q
    |||||||| |||||| || |||||||| | |||||| |||||||||||| |||||||  ||||||| ||| ||||||||||||||||||||||| |||||    
115 aaatcaatatgttgtgcagaaacaacataacacaatgtttgaaaatgtactaattgcgtccaacaccaacgttaatcaatgacttgacatgttcctggag 16  T
192 attagagaggct 203  Q
    ||||||||||||    
15 attagagaggct 4  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 353
Target Start/End: Complemental strand, 2603357 - 2603159
Alignment:
158 taacattaatcaatgacttgacatgttcatggagattagagaggctcggattgctcttatagtggtacatgaggggaaccattctagcagcattcagaca 257  Q
    ||||||||| ||||||||||||| | || || ||||| || || || ||||| ||||  ||||| |||||||| ||||||||||| ||| |||| || ||    
2603357 taacattaaccaatgacttgacaaggtcttgtagattggaaagacttggattactctggtagtgatacatgagaggaaccattcttgcaacattaaggca 2603258  T
258 aaaattggaaaatgatgatgagaact---gatttgcgaccagaatttcttgattgagacatttccattcatttgaaatcatgtgagcaacatgtgtttg 353  Q
    ||| |||| ||||||||| || ||     |||| | |   |  |||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||    
2603257 aaatttggtaaatgatgacgaaaaaattggattcggggttatgatttcttgattgagacgtttccattcatttgaaatcatgttagcaacatgtctttg 2603159  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 2600064 - 2600015
Alignment:
298 atttcttgattgagacatttccattcatttgaaatcatgtgagcaacatg 347  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||||||    
2600064 atttcttgtttgagacgtttccattcatttgaaatcatgttagcaacatg 2600015  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 2591928 - 2591881
Alignment:
300 ttcttgattgagacatttccattcatttgaaatcatgtgagcaacatg 347  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||    
2591928 ttcttgattcagacgtttccattcatttgaaatcatatgagcaacatg 2591881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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