View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_low_11 (Length: 383)
Name: NF10379_low_11
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_11 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 65 - 379
Target Start/End: Complemental strand, 14180258 - 14179941
Alignment:
| Q |
65 |
tgtttcattgatatattgttttcattaaacattttgatcaagttaat--cattttcattcctatatgacaaaaactatgaaaacgatttagaatatgaaa |
162 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14180258 |
tgttttattgatatattgttttcattaaacattttgaacaagttaatttcattttcattcctatatgacaaaaactatgaaaacgatttagaatatgaaa |
14180159 |
T |
|
| Q |
163 |
gttgaagcaaaaggcaatagacatatgaaagtttattt-attttgaataaaacaaaagccacattaatcaaatttcataaatattgaagatgaaataaac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14180158 |
gttgaagcaaaaggcaatagacatatgaaagtttattttattttgaataaaacaaaagccacattaatcaaatttcataaatattgaagatgaaataaac |
14180059 |
T |
|
| Q |
262 |
tgtaattactataggtacaatagataaattaatttcgactaacctgacggtttcgaacttttgcaagagagatctctaattcatgttcaattttactcaa |
361 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14180058 |
tgtaattactacaggtacaatagataaattaatttcgactaacctgacggtttcgaacttttgcaagagagatctctaattcatgttcaattttactcaa |
14179959 |
T |
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| Q |
362 |
gtcatcaaactgtaaatc |
379 |
Q |
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|||||||||||||||||| |
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| T |
14179958 |
gtcatcaaactgtaaatc |
14179941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 11909770 - 11909726
Alignment:
| Q |
24 |
gaacaggcaaaaatgaaatatattaatacaatcaccgtaattgtt |
68 |
Q |
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| T |
11909770 |
gaacaggcaaaaatgagatatattaatacggacaccgtaattgtt |
11909726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 51051955 - 51051999
Alignment:
| Q |
24 |
gaacaggcaaaaatgaaatatattaatacaatcaccgtaattgtt |
68 |
Q |
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| T |
51051955 |
gaacaggcaaaaatgagatatattaatacggacaccgtaattgtt |
51051999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 95871 - 96048
Alignment:
| Q |
202 |
ttttgaataaaacaaaagccacattaatcaaatttcataaatattgaagatgaaataaactgtaattactataggtacaatagataaattaatttcgact |
301 |
Q |
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|||||||||||| |||||||| ||| |||||| ||||| ||||||||||| |||||||||| |||||||| | || |||||||||| |||||| |||| |
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| T |
95871 |
ttttgaataaaataaaagccaaattgatcaaagttcatgaatattgaagaagaaataaact--aattactaga--tagaatagataaaataattttgact |
95966 |
T |
|
| Q |
302 |
aacctgacggtttcgaacttttgcaagagagatctctaattcatgttcaattttactcaagtcatcaaactgtaaatccttc |
383 |
Q |
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|||||| || ||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
95967 |
aacctggcgctttcgaactttagcaagagatatttctaattcatgttcaattttagtcaagtcatcaaaccgtaaagccttc |
96048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 95766 - 95847
Alignment:
| Q |
65 |
tgtttcattgatatattgttttcattaaacattttgatcaagttaa--tcattttcattcctatatgacaaaaactatgaaa |
144 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| || |||||||||||||| |
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| T |
95766 |
tgtttcattgatatattggtttcattcaacattttgatcaagttaatttcattttcattcctatgtgtcaaaaactatgaaa |
95847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 4938793 - 4938749
Alignment:
| Q |
24 |
gaacaggcaaaaatgaaatatattaatacaatcaccgtaattgtt |
68 |
Q |
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|||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
4938793 |
gaacaggcaaaaatgagatatattaatacgaacaccgtaattgtt |
4938749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 19920893 - 19920848
Alignment:
| Q |
25 |
aacaggcaaaaatgaaatatattaatacaatcaccgtaattgtttc |
70 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
19920893 |
aacaggtaaaaatgaaatatattaatacggacaccgtaattgtttc |
19920848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 12824674 - 12824718
Alignment:
| Q |
24 |
gaacaggcaaaaatgaaatatattaatacaatcaccgtaattgtt |
68 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
12824674 |
gaacaggcaaaaatgagatatattaatacggacaccgtaattgtt |
12824718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 4551652 - 4551696
Alignment:
| Q |
24 |
gaacaggcaaaaatgaaatatattaatacaatcaccgtaattgtt |
68 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
4551652 |
gaacaggcaaaaatgagatatattaatacggacaccgtaattgtt |
4551696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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