View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_low_13 (Length: 375)
Name: NF10379_low_13
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 50032585 - 50032909
Alignment:
| Q |
14 |
aataaggaggaaagaaaactgaataatcatgctcaaatctagctaaattgttttggtttgtttcaaagaactcagccagcaaaactcatacaatgtagat |
113 |
Q |
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| T |
50032585 |
aataaggaggaaagaaaactgaataatcatgctcaaatctagctaaattgttttggtttgtttcaaagaactcagccagcaaaactcatacaatgtagat |
50032684 |
T |
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| Q |
114 |
atagagagatagagcattacaacttcaaatttgtgtcttaacatatcaaatgtatccgcactcttctactatttgagtcgtaaaatatgttttaattagt |
213 |
Q |
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| T |
50032685 |
atagagagatagagcattacaacatcaaattcgtgtcttaatatatcaaatgtatccgcactcttctactatttgagtcgtaaaatatattttaattagt |
50032784 |
T |
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| Q |
214 |
agtaaccaaaatccaaaaataggtctttctaatgagatataataatacatacactaatgaatagggaaaggcatgtgcctaagcgatacaattatgttac |
313 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50032785 |
agtaaccaaaatccaaaaataagtctttctaatgagatataataatacatacactaatgaatatggaaaggcatgtgcctaagcgatacaattatgttac |
50032884 |
T |
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| Q |
314 |
aaaactaatatataatataatttgg |
338 |
Q |
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| T |
50032885 |
aaaactaatatataatataatttgg |
50032909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 364
Target Start/End: Original strand, 50032923 - 50032962
Alignment:
| Q |
325 |
ataatataatttggtattatcgaccattgaaggatttctt |
364 |
Q |
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| T |
50032923 |
ataatataatttggtattatcgaccattgaaggatttctt |
50032962 |
T |
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