View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10379_low_17 (Length: 309)
Name: NF10379_low_17
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 38632678 - 38632394
Alignment:
| Q |
1 |
tgctgttccctcgtctgataaaataactgacttttgctatcatatttttcaacaaaatgtatgaaagattcaagagagagtactggatacatctgtttcg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38632678 |
tgctgtttcctcgtctgataaaataactgacttttgctatcatatttttcaacaaa-tgtatgaaagattcaagagagagtactggatacatctgtttcg |
38632580 |
T |
|
| Q |
101 |
atcttgcaaagaaggctcaaataggcagccttaccttgcatttccaagttattgattgaaaaatcgaagtaaagatttaaattacttcatagacatagtt |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38632579 |
atcgtgcaaagaaggctcaaataggcagccttaccttgcattttcaagttattgattgaaaaatcgaagtaaagatttaaattacttcatagacatagtt |
38632480 |
T |
|
| Q |
201 |
tgttataattaattgtgcatgcattaatgattatgagcggagtctctatcaatgattttccaatcaatggctttaactactaagca |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38632479 |
tgttataattaattgtgcatgcattaatgattatgagcggagtctctatcaatgattttccaatcaatggctttaactactaagca |
38632394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University