View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_low_18 (Length: 308)
Name: NF10379_low_18
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 24723727 - 24724008
Alignment:
| Q |
19 |
tagattaatcttctttgtttcctcgtaaagctttaatgaatcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaat |
118 |
Q |
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| T |
24723727 |
tagattaatcttctttgtttcctcgtaaagctttaatgaatcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaat |
24723826 |
T |
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| Q |
119 |
tacataaactttgcttatgatcgaacagtttgcaaattgcaccgtaaggattgcaattttaattctttcaaagcactcaaagtttttcgtggaaacagtc |
218 |
Q |
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| T |
24723827 |
tacataaacttttcttatgatcaaacagtttgcaaattgcaccgtaaggattgcaa-tttaattctttcaaagcactcgaagtttttcgtggaaacagtc |
24723925 |
T |
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| Q |
219 |
cttgaaacaagaacattatatgagattaaacttagggctgacttgattgtcagtgctagaaacctaagagtgtattcatctct |
301 |
Q |
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| T |
24723926 |
cttgaaacaagaacattatatgcgattaaacttagggctgacttgatagtcagtgctagaaacctaagagtgtgttcatctct |
24724008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 21131590 - 21131875
Alignment:
| Q |
19 |
tagattaatcttctttgtttcctcgtaaagctttaatgaatcaaatctggcaactgaaaatgtgatgatctttgatggtgtgcgttgagagatcacaaat |
118 |
Q |
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| T |
21131590 |
tagattaatctttttcgtttcctcgtaaatttttaatgtatcaaatctggcaactggaaatgtgatgatctttgatggtgtgcgttgagagatcacaaat |
21131689 |
T |
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| Q |
119 |
tacataaactttgcttatgatcgaacagtttgcaaattgcaccgtaaggattgcaattttaattctttcaaagcactcaaagtttttcgtggaaacagtc |
218 |
Q |
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| T |
21131690 |
tacataaactttgcttatgatcaaacagtttgcaaattgcaccgcaaggattgcaa-tttaattctttcaaagcactcgaagttttttgtggaaacaatc |
21131788 |
T |
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| Q |
219 |
cttgaaacaagaacat----tatatgagattaaacttagggctgacttgattgtcagtgctagaaacctaagagtgtattcatctct |
301 |
Q |
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| T |
21131789 |
cttgaaacaagaacattatatatatgtgattaaacttatggctgacttgatcgtcagtgctagaaaccgaagagtgtgttcatctct |
21131875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 49580592 - 49580630
Alignment:
| Q |
36 |
tttcctcgtaaagctttaatgaatcaaatctggcaactg |
74 |
Q |
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| T |
49580592 |
tttcctcgtaaagctttaatgaatcaaatccggcaactg |
49580630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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