View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_low_2 (Length: 584)
Name: NF10379_low_2
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Original strand, 41705264 - 41705837
Alignment:
| Q |
1 |
cgccacagtttggttctgtgctcaaaggatatggaactttcatagaaccacagtttggacaagtcttttgtgaacaagtatagtgacagaggaaaaggca |
100 |
Q |
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| T |
41705264 |
cgccacagtttggttctgtgctcaaaggatatggaactttcatagaaccacagtttggacaagtcttttgtgaacaagtatagtgacagaggaaaaggca |
41705363 |
T |
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| Q |
101 |
aagaaaaaaggcatagctaaaatgaaaacaatgtctcctagttgattcaataatcattttgcatggataattaagagaagaaaactgttatgcattgata |
200 |
Q |
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| T |
41705364 |
aagaaaaaaggcatagctaaaatgaaaacaatgtctcctagttgattcaataatcattttgcatggataattaagagaagaaaactgttatgcattgata |
41705463 |
T |
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| Q |
201 |
tgaatgcaatcaaagaaataaaaaggctatgcatagctactgaaatggaataaagtggctccaagaatctacaatatggaataccataaaaatataaaga |
300 |
Q |
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| T |
41705464 |
tgaatgcaatcaaagaaataaaaaggctatgcatagctactgaaatggaataaagtggctccaagaatctacaatatggaataccataaaaatataaaga |
41705563 |
T |
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| Q |
301 |
tctatgggaccaattgatactagatgtatatgttcctataaatggcttttataaatatactctcttttgtaagatgcaaagagaaacgactttggaactt |
400 |
Q |
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| T |
41705564 |
tctatgggaccaattgatactagatgtatatgttcctataaatggcttttataaatatacgctcttttgtaagatgcaaagagaaacgactttggaactt |
41705663 |
T |
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| Q |
401 |
gctaaactttgcagagtttttcttcctttcatttaagtcaagtagcacatatatataaagagcatatcatagtggataaattacttattaaaatatacaa |
500 |
Q |
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| T |
41705664 |
gctaaactttgcagagtttttcttcctttcatttaagtcaagtagcacatatatataaagagcatatcatagtggataaattacttattaaaatatacaa |
41705763 |
T |
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| Q |
501 |
aatgcttgaaaactaaaccattgtaattgttgcactatcggtaattgaagagccaatcccaacgttcgcctatg |
574 |
Q |
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| T |
41705764 |
aatgcttgaaaactagaccattgtaattgttgcactatcggtaattgaatagccaatcccaacgttcgcctatg |
41705837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 1441065 - 1441132
Alignment:
| Q |
61 |
aagtcttttgtgaacaagtatagtgacagaggaaaaggcaaagaaaaaaggcatagctaaaatgaaaa |
128 |
Q |
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| T |
1441065 |
aagtcttttgtgaacaagaataatgacaaaggaaaagacacagaagaaaggcatagctaaaataaaaa |
1441132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1441018 - 1441050
Alignment:
| Q |
1 |
cgccacagtttggttctgtgctcaaaggatatg |
33 |
Q |
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| T |
1441018 |
cgccacaatttggttctgtgctcaaaggatatg |
1441050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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