View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10379_low_21 (Length: 272)

Name: NF10379_low_21
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10379_low_21
NF10379_low_21
[»] chr8 (2 HSPs)
chr8 (1-256)||(565954-566209)
chr8 (56-84)||(41417-41445)
[»] chr7 (2 HSPs)
chr7 (10-145)||(43290961-43291096)
chr7 (57-149)||(20061091-20061184)
[»] chr1 (1 HSPs)
chr1 (1-130)||(32920526-32920656)
[»] chr5 (4 HSPs)
chr5 (1-157)||(32249190-32249346)
chr5 (57-139)||(7860261-7860342)
chr5 (10-74)||(32236688-32236752)
chr5 (41-73)||(19947546-19947578)
[»] chr4 (1 HSPs)
chr4 (10-131)||(33841230-33841352)
[»] chr2 (5 HSPs)
chr2 (11-145)||(18834814-18834947)
chr2 (62-145)||(8489639-8489721)
chr2 (1-151)||(1759346-1759504)
chr2 (36-73)||(11158474-11158511)
chr2 (25-58)||(705681-705714)
[»] chr3 (1 HSPs)
chr3 (57-145)||(34106348-34106436)
[»] chr6 (8 HSPs)
chr6 (178-256)||(844696-844773)
chr6 (36-84)||(6817068-6817116)
chr6 (178-256)||(869979-870056)
chr6 (74-156)||(31001348-31001429)
chr6 (109-158)||(6816997-6817046)
chr6 (40-72)||(5933984-5934016)
chr6 (36-72)||(8293787-8293823)
chr6 (88-151)||(5933900-5933963)
[»] scaffold0140 (1 HSPs)
scaffold0140 (40-130)||(17018-17110)
[»] scaffold0079 (1 HSPs)
scaffold0079 (58-157)||(7505-7605)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 565954 - 566209
Alignment:
Q  1 atagtagaaggatgcacacaataagtaaatcgctgaagcaacatgatgatagaagtgtagtaattcacttgaaaaatcttttttccgatgttttatatca 100  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  565954 atagtagaagggtgcacaaaataagtaaatcgctgaagcaacatgatggtagaagtgtagtaattcacttgaaaaatcttttttccgatgttttatatca 566053  T
Q  101 acgtacttgtaccttcattttttaaaatttgttgtattacgtacccgtaccggtacccaccatcgggccaatatcagtttaagttcctagatgtgactct 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  566054 acgtacttgtaccttcattttttaaaatttgttgtattatgtacccgtacctgtacccatcatcgggccaatatcagtttaagttcctagatgtgactct 566153  T
Q  201 aaaccttttccattttaatgccaattgtgtaagagttgttgttgaagatccatttt 256  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  566154 aaaccttttccattttaatgccaattgtgtaagagttcttgttgaagatccatttt 566209  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 41417 - 41445
Alignment:
Q  56 tgtagtaattcacttgaaaaatctttttt 84  Q
    |||||||||||||||||||||||||||||    
T  41417 tgtagtaattcacttgaaaaatctttttt 41445  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 43291096 - 43290961
Alignment:
Q  10 ggatgcacacaataagtaaatcgctgaagcaacatgatgatagaagtgtagtaattcacttgaaaaatcttttttccgatgttttatatcaacgtacttg 109  Q
    ||||||||| || ||||||| | || ||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||| ||||||||  |    
T  43291096 ggatgcacaaaaaaagtaaaactctcaagcaacatgatgatagaagtgtagtaattcgcttgaaaaatattttttttgatgttttataccaacgtacccg 43290997  T
Q  110 taccttcattttttaaaatttgttgtattacgtacc 145  Q
    ||||||||||||||||||||||  |||||| |||||    
T  43290996 taccttcattttttaaaatttgccgtattatgtacc 43290961  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 20061184 - 20061091
Alignment:
Q  57 gtagtaattcacttgaaaaatcttttttccgatgttttatatcaacgtacttgtaccttcatt--ttttaaaatttgttgtattacgtacccgta 149  Q
    ||||||| |||||||| |||| ||| ||  |||| |||||||||||||||  |||| ||||||  |||||||| |||| ||||||||||||||||    
T  20061184 gtagtaagtcacttgagaaatatttattt-gatggtttatatcaacgtacccgtacattcattctttttaaaagttgtcgtattacgtacccgta 20061091  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 32920656 - 32920526
Alignment:
Q  1 atagtagaaggatgcacacaataagtaaatcgctgaagcaacatgatgatagaagtgtagtaattcacttgaaaaatctttttt-ccgatgttttatatc 99  Q
    ||||| ||||| |||||| || ||||||| | || || ||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  32920656 atagttgaagggtgcacaaaaaaagtaaaactctaaaacaacatgataatagaagtgtagtaattcacttgaaaaatcttttttgttgatgttttatatc 32920557  T
Q  100 aacgtacttgtaccttcattttttaaaattt 130  Q
    || |||| |||||||||||||||||||||||    
T  32920556 aatgtacatgtaccttcattttttaaaattt 32920526  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 32249346 - 32249190
Alignment:
Q  1 atagtagaaggatgcacacaataagtaaatcgctgaagcaacatgatgatagaagtgtagtaattcacttgaaaaatcttttttccgatgttttatatca 100  Q
    |||||||| |||||||||||| || |||| | || ||||| ||||||| ||||||||||||| ||||||||||||||| |||||  |||||||||||  |    
T  32249346 atagtagagggatgcacacaaaaaataaaactctcaagcatcatgatggtagaagtgtagtacttcacttgaaaaatcgtttttttgatgttttatacta 32249247  T
Q  101 acgtacttgtaccttcattttttaaaatttgttgtattacgtacccgtaccggtacc 157  Q
    ||||||  ||||||| |||||| ||||||||  ||||||||||||  ||||||||||    
T  32249246 acgtacccgtaccttgatttttaaaaatttgccgtattacgtaccgataccggtacc 32249190  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 7860261 - 7860342
Alignment:
Q  57 gtagtaattcacttgaaaaatcttttttccgatgttttatatcaacgtacttgtaccttcattttttaaaatttgttgtatta 139  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||  |||| ||||||||||||||||| | ||||||    
T  7860261 gtagtaattcacttgaaaaatctttta-ctgatgttttatatcaacgtacccgtactttcattttttaaaatttatcgtatta 7860342  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 32236752 - 32236688
Alignment:
Q  10 ggatgcacacaataagtaaatcgctgaagcaacatgatgatagaagtgtagtaattcacttgaaa 74  Q
    |||||||||||| || |||| | || ||||| ||||||||||||||||||||| |||||||||||    
T  32236752 ggatgcacacaaaaaataaaactctcaagcatcatgatgatagaagtgtagtacttcacttgaaa 32236688  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 19947578 - 19947546
Alignment:
Q  41 acatgatgatagaagtgtagtaattcacttgaa 73  Q
    ||||||||||||||||||||| |||||||||||    
T  19947578 acatgatgatagaagtgtagtgattcacttgaa 19947546  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 33841352 - 33841230
Alignment:
Q  10 ggatgcacacaataagtaaatcgctgaagcaacatgatgatagaagtgtagtaattcacttgaaaaatctt-ttttccgatgttttatatcaacgtactt 108  Q
    |||||||||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||||||       
T  33841352 ggatgcacacaaaaagtaaaactctcaagcaacatgatgatagaagtgtagtaattcacttgaaaaatctttttttatgatgttttataccaacgtatcc 33841253  T
Q  109 gtaccttcattttttaaaatttg 131  Q
    |||||||||| |||| |||||||    
T  33841252 gtaccttcatctttttaaatttg 33841230  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 18834814 - 18834947
Alignment:
Q  11 gatgcacacaataagtaaatcgctgaagcaacatgatgatagaagtgtagtaattcacttgaaaaatcttttttccgatgttttatatcaacgtacttgt 110  Q
    |||||||| || ||||||| | || |||||||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||||  ||    
T  18834814 gatgcacaaaaaaagtaaaactctcaagcaacatgatgatagaagtgtagtaattcactggaaaaaactttttt-tgatgttttatatcaacgtacccgt 18834912  T
Q  111 accttcattttttaaaatttgttgtattacgtacc 145  Q
    || || |  ||||||||||||  ||||||||||||    
T  18834913 acattaacattttaaaatttgccgtattacgtacc 18834947  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 8489721 - 8489639
Alignment:
Q  62 aattcacttgaaaaatcttttttccgatgttttatatcaacgtacttgtaccttcattttttaaaatttgttgtattacgtacc 145  Q
    |||||||||||||||||||||||   |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  8489721 aattcacttgaaaaatctttttttt-atgttttatatcaacgtacccgtaccttcatttttaaaaatttgttgtattacgtacc 8489639  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 1759346 - 1759504
Alignment:
Q  1 atagtaga-aggatgcacacaataagtaaatcgctgaagcaacatgatgatagaagtgtagtaattcacttgaaaaatc-----ttttttccgatgtttt 94  Q
    |||||||| |||||||||| || || |||| | || ||| ||||||||||||||||||||||||||||||||||||| |     ||||||   |||||||    
T  1759346 atagtagagaggatgcacaaaaaaaataaaactctcaagtaacatgatgatagaagtgtagtaattcacttgaaaaaaccttcttttttttttatgtttt 1759445  T
Q  95 atatcaacgtacttgtaccttca--ttttttaaaatttgttgtattacgtacccgtacc 151  Q
    ||| ||||||||  |||||||||  ||||||||||||||  |||||||||||| |||||    
T  1759446 ataccaacgtacccgtaccttcattttttttaaaatttgccgtattacgtaccggtacc 1759504  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 11158474 - 11158511
Alignment:
Q  36 aagcaacatgatgatagaagtgtagtaattcacttgaa 73  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11158474 aagcaacatgatgatagaagtgtagtaattcacttgaa 11158511  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 705714 - 705681
Alignment:
Q  25 gtaaatcgctgaagcaacatgatgatagaagtgt 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  705714 gtaaatctctgaagcaacatgatgatagaagtgt 705681  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 34106348 - 34106436
Alignment:
Q  57 gtagtaattcacttgaaaaatcttttttccgatgttttatatcaacgtacttgtaccttcattttttaaaatttgttgtattacgtacc 145  Q
    ||||||||||||||| ||||| ||||||   ||||||||| ||||||||| || ||||| ||||||||||||||| |||||| ||||||    
T  34106348 gtagtaattcacttggaaaatattttttaaaatgttttatgtcaacgtacctgcaccttaattttttaaaatttgatgtatttcgtacc 34106436  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 844696 - 844773
Alignment:
Q  178 tttaagttcctagatgtgactctaaaccttttccattttaatgccaattgtgtaagagttgttgttgaagatccatttt 256  Q
    |||||||||||||||||||| | |||| ||| | ||||||||||||| |||||||||||  ||||||||||||||||||    
T  844696 tttaagttcctagatgtgaccccaaac-tttccaattttaatgccaaatgtgtaagagtcattgttgaagatccatttt 844773  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 6817116 - 6817068
Alignment:
Q  36 aagcaacatgatgatagaagtgtagtaattcacttgaaaaatctttttt 84  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  6817116 aagcaacataatgatagaaatgtagtaattcacttgaaaaatctttttt 6817068  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 869979 - 870056
Alignment:
Q  178 tttaagttcctagatgtgactctaaaccttttccattttaatgccaattgtgtaagagttgttgttgaagatccatttt 256  Q
    ||||||||||| |||||||  | |||| ||||||||||||||||||| |||||||||||  |||| |||||||||||||    
T  869979 tttaagttccttgatgtgatcccaaac-ttttccattttaatgccaaatgtgtaagagtcattgtagaagatccatttt 870056  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 31001348 - 31001429
Alignment:
Q  74 aaatcttttttccgatgttttatatcaacgtacttgtaccttcattttttaaaatttgttgtattacgtacccgtaccggtac 156  Q
    ||||||||||||  |||||||||||||| |||| ||||||||| ||||| ||||||| |  ||||||||||| ||||| ||||    
T  31001348 aaatcttttttct-atgttttatatcaaggtacctgtaccttcctttttaaaaatttatcatattacgtaccggtacccgtac 31001429  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 6817046 - 6816997
Alignment:
Q  109 gtaccttcattttttaaaatttgttgtattacgtacccgtaccggtaccc 158  Q
    |||||||||||||||||||||||| |||||| ||||  ||||||||||||    
T  6817046 gtaccttcattttttaaaatttgtcgtattatgtactggtaccggtaccc 6816997  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 5934016 - 5933984
Alignment:
Q  40 aacatgatgatagaagtgtagtaattcacttga 72  Q
    |||||||||||||||||||||||||||||||||    
T  5934016 aacatgatgatagaagtgtagtaattcacttga 5933984  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 8293823 - 8293787
Alignment:
Q  36 aagcaacatgatgatagaagtgtagtaattcacttga 72  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8293823 aagcaacatgatgatagaagtggagtaattcacttga 8293787  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 5933963 - 5933900
Alignment:
Q  88 atgttttatatcaacgtacttgtaccttcattttttaaaatttgttgtattacgtacccgtacc 151  Q
    |||| ||||| ||| ||||  |||||||||||||||||||||||  |||||||||||| |||||    
T  5933963 atgtattataccaatgtacccgtaccttcattttttaaaatttgccgtattacgtaccggtacc 5933900  T

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Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 17018 - 17110
Alignment:
Q  40 aacatgatgatagaagtgtagtaattc-acttgaaaaatc-ttttttccgatgttttatatcaacgtacttgtaccttcattttttaaaattt 130  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||  |||||||| || |||| |||  ||||||| ||||||||||||||    
T  17018 aacatgatgatagaagtgtagtaattcaacttaaaaaatctttttttatgatgttttgtaccaacctaccggtaccttaattttttaaaattt 17110  T

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Target: scaffold0079 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 7605 - 7505
Alignment:
Q  58 tagtaattcacttgaaaaatcttttttccgatgttttat-atcaacgtacttgtaccttcattttttaaaatttgttgtattacgtacccgtaccggtac 156  Q
    |||||| || |||| |||||||||||   || ||||||| ||||| ||||  |||||||  ||||||||||||||| |||||||||||| ||||| ||||    
T  7605 tagtaactctcttggaaaatctttttcttgacgttttattatcaatgtacccgtacctttgttttttaaaatttgtcgtattacgtaccggtacccgtac 7506  T
Q  157 c 157  Q
    |    
T  7505 c 7505  T

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