View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_low_24 (Length: 257)
Name: NF10379_low_24
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_24 |
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| [»] scaffold1175 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 21895350 - 21895125
Alignment:
| Q |
21 |
acttatacaaatgatggtgaatatccagcttgatacccctgctgaacatgaacattgcaattgatcaaactaatgaatgttaaaattgacctaaaacaaa |
120 |
Q |
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| T |
21895350 |
acttatacaaatgatggtgaatatccagcttgatacccctgctgaacatgaacattgcaattgatcaaactaatgaatgttaaaattgacctaaaacaaa |
21895251 |
T |
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| Q |
121 |
ataattttaacttgcttaccttatcagtggtagtcttggtcttctactcaattgtattatcactccaagctacatggaatcaaatttcccttgtnnnnnn |
220 |
Q |
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| T |
21895250 |
acaattttaacttgcttaccttatcggtggtagtcttggtcttgtcctcaattgtattatcactccaagctacatggaatcaaatttcccttgtaaaaaa |
21895151 |
T |
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| Q |
221 |
ntaagccacaatgaataacttttcat |
246 |
Q |
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||||||||||||||||||||||||| |
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| T |
21895150 |
ataagccacaatgaataacttttcat |
21895125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 22216833 - 22216941
Alignment:
| Q |
99 |
gttaaaattgacctaaaacaaaataattttaacttgcttaccttatcagtggtagtcttggtcttctactcaattgtattatcactccaagctacatgga |
198 |
Q |
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| T |
22216833 |
gttaaagttgacctaaaacaaaacagttttaacttgcttacctcatcagtcatatacttgatctt---ctcaattgtattattactccaaactacatgga |
22216929 |
T |
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| Q |
199 |
atcaaatttccc |
210 |
Q |
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| T |
22216930 |
atcaaatttccc |
22216941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 33097666 - 33097777
Alignment:
| Q |
96 |
aatgttaaaattgacctaaaacaaaataattttaacttgcttaccttatcagtggtagtcttggtcttctactcaattgtattatcactccaagctacat |
195 |
Q |
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||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||| |
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| T |
33097666 |
aatgttaaagttgacctaaaacaaaatagttttaacatgcttaccttatcaaccatagacttggtctt---ctcaattgtattatcactccaacctacat |
33097762 |
T |
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| Q |
196 |
ggaatcaaatttccc |
210 |
Q |
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| T |
33097763 |
tgaatcaaatttccc |
33097777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 1058 - 953
Alignment:
| Q |
99 |
gttaaaattgacctaaaacaaaataattttaacttgcttaccttatcagtggtagtcttggtcttctactcaattgtattatcactccaagctacatgga |
198 |
Q |
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|||||| |||||||||||||||| | |||||||||||| |||| ||| || || ||| |||||| |||||||||||| ||||||||||||||||| |
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| T |
1058 |
gttaaagttgacctaaaacaaaacagttttaacttgctgacctcatccgtcatatatttgatcttct---caattgtattattactccaagctacatgga |
962 |
T |
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| Q |
199 |
atcaaattt |
207 |
Q |
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| T |
961 |
atcaaattt |
953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 37484311 - 37484199
Alignment:
| Q |
97 |
atgttaaaattgacctaaaacaaaataattttaacttgcttaccttatcagtggtagtcttggtcttctactcaattgtat--tatcactccaagctaca |
194 |
Q |
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|||||||| |||||||||||||||||| | ||||||||||| ||| |||| | ||| || ||||| ||||||||||| ||||||||||| ||||| |
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| T |
37484311 |
atgttaaagttgacctaaaacaaaatagtcttaacttgcttgcctcatcaatcatagactccgtctt---ctcaattgtattatatcactccaacctaca |
37484215 |
T |
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| Q |
195 |
tggaatcaaatttccc |
210 |
Q |
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| T |
37484214 |
tagaatcaaatttccc |
37484199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 21984950 - 21984993
Alignment:
| Q |
167 |
ctcaattgtattatcactccaagctacatggaatcaaatttccc |
210 |
Q |
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| T |
21984950 |
ctcaattctattatcactccaacctacatggaatcaaatttccc |
21984993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 37249196 - 37249242
Alignment:
| Q |
29 |
aaatgatggtgaatatccagcttgatacccctgctgaacatgaacat |
75 |
Q |
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| T |
37249196 |
aaatgatggtgaatatccagctcaatacccctgctggacatgaacat |
37249242 |
T |
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