View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10379_low_25 (Length: 248)
Name: NF10379_low_25
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_25 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 1255258 - 1255485
Alignment:
| Q |
21 |
atataatagttttagatagaatttgaatatgactcaacaaatcaatgcaataattagatttatcaatttttattcttggctcaagtcttctttggatcga |
120 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1255258 |
atataattgttttagatagaatttgaatatgactcaacaaatcaatgcaataattagatttatcaatttttattcttggctcaagtcttctttggatcga |
1255357 |
T |
|
| Q |
121 |
cttatttgagcttatctattataatcagttgtgagactattagagagagtttacagaaacaacttatgacatgtccttaaactatattacttagcttatt |
220 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1255358 |
cttatttgaggttatctattataatcacttgtgagactgttagagagagtttacagaaacaacttatgacatgtccttaaactatattacttagcttatt |
1255457 |
T |
|
| Q |
221 |
tccacaaacatcacaaaatatatagcta |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1255458 |
tccacaaacatcacaaaatatatagcta |
1255485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 1662712 - 1662629
Alignment:
| Q |
121 |
cttatttgagcttatctattataatcagt---tgtgagactattagagagagtttacagaaacaacttatgacatgtccttaaa |
201 |
Q |
| |
|
|||||||||||||||||| || || ||| || ||||||||| | ||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
1662712 |
cttatttgagcttatctactagcataagtacatgcgagactatttgcgagagcttacggaaacaacttatgacatgtccataaa |
1662629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 24502791 - 24502836
Alignment:
| Q |
150 |
tgtgagactattagagagagtttacagaaacaacttatgacatgtc |
195 |
Q |
| |
|
|||||| | ||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
24502791 |
tgtgaggcaatttgagagagcttacagaaacaacttatgacatgtc |
24502836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 26179579 - 26179534
Alignment:
| Q |
149 |
ttgtgagactattagagagagtttacagaaacaacttatgacatgt |
194 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
26179579 |
ttgtgagactgttagggagagtttaaggaaacaacttatgacatgt |
26179534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 1810093 - 1810038
Alignment:
| Q |
141 |
ataatcagttgtgagactattagagagagtttacagaaacaacttatgacatgtcc |
196 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
1810093 |
ataatcacttgtgagactatttgagagagcttacggaaacaacttatgacatgtcc |
1810038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 25182919 - 25183005
Alignment:
| Q |
119 |
gacttatttgagcttatctattataatcagttgtgagactattagagagagtttacagaaacaacttatgacatgtccttaaactat |
205 |
Q |
| |
|
|||||||||||||||| ||| ||||| | |||||||||| || ||||||| ||| |||||||||||||||| ||| ||| |||| |
|
|
| T |
25182919 |
gacttatttgagcttacctactataagaacttgtgagactgtttgagagagcttatgaaaacaacttatgacatatccataagctat |
25183005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 22232925 - 22232889
Alignment:
| Q |
165 |
gagagtttacagaaacaacttatgacatgtccttaaa |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
22232925 |
gagagtttatagaaacaacttatgacatgtccataaa |
22232889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 8420129 - 8420206
Alignment:
| Q |
122 |
ttatttgagcttatctatt---ataatcagttgtgagactattagagagagtttacagaaacaacttatgacatgtcc |
196 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||||| |||| ||||| ||| ||||| | |||||||||||||| |
|
|
| T |
8420129 |
ttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtcc |
8420206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 27693401 - 27693446
Alignment:
| Q |
149 |
ttgtgagactattagagagagtttacagaaacaacttatgacatgt |
194 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
27693401 |
ttgtgagactatttgagagaatttatggaaacaacttatgacatgt |
27693446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 7008739 - 7008656
Alignment:
| Q |
119 |
gacttatttgagcttatctatt---ataatcagttgtgagactattagagagagtttacagaaacaacttatgacatgtccttaa |
200 |
Q |
| |
|
|||||||||||| ||||||| | |||| || ||||||||| |||||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
7008739 |
gacttatttgagtttatctactggcataagcacttgtgagacg-ttagagagagcttatagaaacaacctatgacatgtccttaa |
7008656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 43985358 - 43985270
Alignment:
| Q |
111 |
tttggatcgacttatttgagcttatctatt---ataatcagttgtgagactattagagagagtttacagaaacaacttatgacatgtcc |
196 |
Q |
| |
|
||||||||||||||||| || ||||||| | |||| || |||| | ||| || ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
43985358 |
tttggatcgacttatttaagtttatctactgacataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtcc |
43985270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University