View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_low_26 (Length: 241)
Name: NF10379_low_26
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 1255804 - 1255581
Alignment:
| Q |
18 |
agtccatactcagttaaaagtggctcaaaggaattgtttagcattacattggaggattttagatgaccatgtggtaggttttgtttagggaattctttgt |
117 |
Q |
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| T |
1255804 |
agtccatactcagttaaaagtggctcaaaggaaatgtttagcattacattggaggattttagatgaccatgtggtaggttttgtttagggaattctttgt |
1255705 |
T |
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| Q |
118 |
agaggtgtgctaagcctcttgctactccttttatgatttttagacgagttgaccaggttagtacaatgccgtttctacctgcaaaatcaatgtaaaaatt |
217 |
Q |
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| T |
1255704 |
agaggtgtgctaagcctcttgctactccttttatgatttttagacgagttgaccaggttagtacaatgctgtttctacctggaaaatcaatgtaaaaatt |
1255605 |
T |
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| Q |
218 |
gttaagcacttatagcatataagc |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
1255604 |
gttaagcacttatagcatataagc |
1255581 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 36125875 - 36125745
Alignment:
| Q |
18 |
agtccatactcagttaaaagtggctcaaaggaattgtttagcattacattggaggattttagatgaccatgtggtaggttttgtttagggaattctttgt |
117 |
Q |
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||||||||||||||||||| |||||||| |||| || || || ||||| || ||||||||||| |||||||||| |||| | || |||||| ||| |
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| T |
36125875 |
agtccatactcagttaaaaaaggctcaaatgaatggtctaacacaacattcgatgattttagatgtccatgtggtaacttttcgtccggaaattctctgt |
36125776 |
T |
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| Q |
118 |
agaggtgtgctaagcctcttgctactccttt |
148 |
Q |
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| T |
36125775 |
aaaggtaagctaaacctctagctactccttt |
36125745 |
T |
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