View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_low_29 (Length: 238)
Name: NF10379_low_29
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 5458395 - 5458183
Alignment:
| Q |
15 |
agttttgaacactgtcaatgattaagaccgtggcattggatgtcacattgtttaaagaccaaattcattcgtatacataagtgtcacggaatgggatgca |
114 |
Q |
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| T |
5458395 |
agttttgaacactgtcaatgattaagaccgtggcattggatgtcacattgtttaaagaccaaattcattcgtatacataagtgtcacggaatgggatgca |
5458296 |
T |
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| Q |
115 |
gtgagatgtctgttggaccacaacaatatttacattatcaagctaatggagttattttatcttatatgtttgtcataaggaaaacgttcttgtcgttttt |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5458295 |
gtgagatgtctgttggaccacaacaacatttacattatcaagctaatggagtttttttatcttatatgtttgtcataaggaaaacgttcttgtcgttttt |
5458196 |
T |
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| Q |
215 |
tcatttctttctt |
227 |
Q |
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||||||||||||| |
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| T |
5458195 |
tcatttctttctt |
5458183 |
T |
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