View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10379_low_34 (Length: 209)
Name: NF10379_low_34
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 46906165 - 46905989
Alignment:
| Q |
1 |
ttagaatttagttgttgtatcatcttctctaagacaccaatggtgtctaccgatttgccatgagaaacaaacacagtacttttattcttcatctttgatg |
100 |
Q |
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| T |
46906165 |
ttagaatttagttgttgtatcatcttctccaagacaccgatggtgtctaccgatttgccatgagaaacaaacacagtacttttattcttcatctttgatg |
46906066 |
T |
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| Q |
101 |
tgttaaaattaatgatagatttaagtactggtaagaattaatttctacacaaatagttctttggcttttccaaacat |
177 |
Q |
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| T |
46906065 |
tgttaaagttaatgatagatctaagtactagtaagaattaatttctacacaaatagttctttggctttttcaaacat |
46905989 |
T |
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Target: chr7 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 43406213 - 43406039
Alignment:
| Q |
4 |
gaatttagttgttgtatcatcttctctaagacaccaatggtgtctaccgatttgccatgagaaacaaacacagtactttt-attcttcatctttgatgtg |
102 |
Q |
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||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43406213 |
gaatttaattgttgtatcatcttctccaagacacaaatggtgtctaccgatttgccatgagaaacaaacacagtactttttattcttcatctttgatgtg |
43406114 |
T |
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| Q |
103 |
ttaaaattaatgatagatttaagtactggtaagaattaatttctacacaaatagttctttggcttttccaaacat |
177 |
Q |
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||||| |||||||||||| ||||| || | |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43406113 |
ttaaagttaatgatagatctaagtgctagcaagaattaatttctaccaaaatagttctttggcttttccaaacat |
43406039 |
T |
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