View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10379_low_6 (Length: 428)
Name: NF10379_low_6
Description: NF10379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10379_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 22 - 405
Target Start/End: Original strand, 35295952 - 35296334
Alignment:
| Q |
22 |
atggatacaaagggtggtcaggggaagacaggtttatttcttgaaggaatagaagttaggcctaaggaaggaaattaagcatacagccgcaggggtcttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35295952 |
atggatacaaagggtggtcaggggaagacaggtttatttcttgaaggaatagaagttaggcctaaggaaggaaattaagcatacagccgcaggggtcttg |
35296051 |
T |
|
| Q |
122 |
cgtcttggacgacatactatgtgacatgcatattcttgttccaaagtgtctctttgtaaagcatatgaataagtttgtgcgggcatcatccgtgatcata |
221 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35296052 |
cgtcttggacaacatactatgtgacatgcatattcttgttccaaagtgtctctttgtaaagtatatgaataagtttgtgcgggcatcatccgtgatcata |
35296151 |
T |
|
| Q |
222 |
atgggaactttattaaatgtttcttttgtaaattgggtgatgtttaatgctatttgggctaagatgatgggtcttcaacttggtattactttcgctagat |
321 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35296152 |
atgggaactttattaaaggtttcttttgtaagttgggtgatgtttaatgctatttgggctaagatgatgggtcttcaacttggtatcactttcgctagat |
35296251 |
T |
|
| Q |
322 |
ctttgtcgctcttcgtagaatttgagcttgattcagcaattgttatggacatggtaaacaaaggcttcactagcactactcttc |
405 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35296252 |
ctttgtcgctc-tcgtagaatttgagcttgattcagcaattgttatggacatggtaaacaaaggcttcactagcactactcttc |
35296334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 35224982 - 35224916
Alignment:
| Q |
25 |
gatacaaagggtggtcaggggaagacaggtttatttcttgaaggaatagaagttaggcctaaggaag |
91 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
35224982 |
gatataaagggtggtcattggaagagaggtttctttgttgaaggaatagaagttaggcctaaggaag |
35224916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 35219111 - 35219064
Alignment:
| Q |
44 |
ggaagacaggtttatttcttgaaggaatagaagttaggcctaaggaag |
91 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
35219111 |
ggaagagaggtttctttgttgaaggaatagaagttaggcctaaggaag |
35219064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 35270502 - 35270443
Alignment:
| Q |
28 |
acaaagggtggtcaggggaagacaggtttatttcttgaaggaatagaagttaggcctaag |
87 |
Q |
| |
|
|||||||||||| | |||||| |||| || ||||||||||||||||||||||||||||| |
|
|
| T |
35270502 |
acaaagggtggtaattggaagagaggtctagttcttgaaggaatagaagttaggcctaag |
35270443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 35476338 - 35476294
Alignment:
| Q |
58 |
tttcttgaaggaatagaagttaggcctaaggaaggaaattaagca |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
35476338 |
tttcttgaaggaatagaagttagacctaaggaagacaattaagca |
35476294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 45525503 - 45525459
Alignment:
| Q |
58 |
tttcttgaaggaatagaagttaggcctaaggaaggaaattaagca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
45525503 |
tttcttgaaggaatagaagttaggcctaaggtagacaattaagca |
45525459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 45531604 - 45531560
Alignment:
| Q |
58 |
tttcttgaaggaatagaagttaggcctaaggaaggaaattaagca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
45531604 |
tttcttgaaggaatagaagttaggcctaaggtagacaattaagca |
45531560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 8638948 - 8638901
Alignment:
| Q |
44 |
ggaagacaggtttatttcttgaaggaatagaagttaggcctaaggaag |
91 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
8638948 |
ggaagagaggtttctttgttgaaggaatagaagttaggcccaaggaag |
8638901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 35190422 - 35190379
Alignment:
| Q |
44 |
ggaagacaggtttatttcttgaaggaatagaagttaggcctaag |
87 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
35190422 |
ggaagagaggtctctttcttgaaggaatagaagttaggcctaag |
35190379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 899888 - 899932
Alignment:
| Q |
58 |
tttcttgaaggaatagaagttaggcctaaggaaggaaattaagca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
899888 |
tttcttgaaggaatagaagttaggcctaaggaggaaaattaagca |
899932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 53924392 - 53924421
Alignment:
| Q |
58 |
tttcttgaaggaatagaagttaggcctaag |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
53924392 |
tttcttgaaggaatagaagttaggcctaag |
53924421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University