View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1037_low_2 (Length: 489)
Name: NF1037_low_2
Description: NF1037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1037_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Original strand, 43291104 - 43291531
Alignment:
| Q |
9 |
accacagacaaaaccagatatatatggttactactcccaacacaggctggcttaagtgggatgaatgaattgaggcttcttggacggacgccaattatat |
108 |
Q |
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| T |
43291104 |
accagagacaaaaccagatatatatggttactactcccaacacaggctggcttaagtgggatgaatgaattgaggcttcttggacggacgccaattatat |
43291203 |
T |
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| Q |
109 |
ttattttccatgttgacatgacatgagcattcaaccggagactctagctagctaataatgcctcaacagaacataccctttccccctggacacattcagg |
208 |
Q |
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| T |
43291204 |
ttattttccatgttgacatgacatgagcattcaacatgagactctagctagctaataatgcctcaacagaacataccttttccccctggacacattcagg |
43291303 |
T |
|
| Q |
209 |
aatatctcatatcctatatcatcccaannnnnnnnnnnnggatcattttgatgcttccaattatatttgtttatttcttatgaataacatataaatagga |
308 |
Q |
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| T |
43291304 |
aatatctcatatcctatatcatcccaa-ttattttttttggatcattttgatgcttccaattatatttgtttatttcttatgaataacatataaatatga |
43291402 |
T |
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| Q |
309 |
tcttctttttaaaacactttagatatattaaaactcgaattagaacttgcaatattaatatctttgtattcagttcttgtaattttcacagctggattct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43291403 |
tcttctttttaaaacactttagatatattaaaactcgaattagaacttgcaatattcatatctttgtattcagttcttgtaattttcacagctagattct |
43291502 |
T |
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| Q |
409 |
tcaacattaaaaaactataaaactaggga |
437 |
Q |
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| T |
43291503 |
tcaacattaaaaaactataaaactaggga |
43291531 |
T |
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